Variant report

Variant	rs73492287
Chromosome Location	chr11:63616704-63616705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63614265..63617185-chr11:63623129..63625400,2	MCF-7	breast:
2	chr11:63614953..63616808-chr11:63640092..63642061,2	MCF-7	breast:
3	chr11:63612581..63617250-chr11:63617280..63622514,6	MCF-7	breast:
4	chr11:63578410..63581843-chr11:63612969..63616771,3	MCF-7	breast:
5	chr11:63610591..63619595-chr11:63634759..63639809,13	MCF-7	breast:
6	chr11:63605094..63609854-chr11:63611414..63617957,11	K562	blood:

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11825727	1.00[AMR][1000 genomes]
rs57058815	1.00[AMR][1000 genomes]
rs58822345	1.00[AMR][1000 genomes]
rs59054123	1.00[AMR][1000 genomes]
rs59146342	1.00[AMR][1000 genomes]
rs60725842	1.00[AMR][1000 genomes]
rs61184552	1.00[AMR][1000 genomes]
rs7125886	1.00[AMR][1000 genomes]
rs73492260	1.00[AMR][1000 genomes]
rs73492262	1.00[AMR][1000 genomes]
rs73492266	1.00[AMR][1000 genomes]
rs73492273	1.00[AMR][1000 genomes]
rs73492274	1.00[AMR][1000 genomes]
rs73492297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494126	1.00[AMR][1000 genomes]
rs73494128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494160	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494167	1.00[AMR][1000 genomes]
rs73494181	1.00[AMR][1000 genomes]
rs73496034	1.00[AMR][1000 genomes]
rs73496075	1.00[AMR][1000 genomes]
rs73496090	1.00[AMR][1000 genomes]
rs73496096	1.00[AMR][1000 genomes]
rs73496099	1.00[AMR][1000 genomes]
rs73496100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63608400-63618600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:63609400-63618400	Weak transcription	Ovary	ovary
3	chr11:63609600-63619200	Weak transcription	HSMMtube	muscle
4	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
6	chr11:63611000-63620200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:63611800-63617400	Strong transcription	Fetal Stomach	stomach
8	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
9	chr11:63612000-63617200	Enhancers	Pancreas	Pancrea
10	chr11:63612000-63618000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:63612600-63616800	Enhancers	Placenta	Placenta
12	chr11:63612600-63618400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:63613000-63618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:63613000-63618600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:63613000-63622600	Weak transcription	Brain Germinal Matrix	brain
16	chr11:63613200-63625600	Weak transcription	HUVEC	blood vessel
17	chr11:63613200-63626200	Weak transcription	NHLF	lung
18	chr11:63613200-63632400	Weak transcription	Fetal Brain Female	brain
19	chr11:63613200-63633000	Weak transcription	HSMM	muscle
20	chr11:63613400-63617000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:63613400-63618200	Weak transcription	Primary B cells from cord blood	blood
22	chr11:63613400-63618200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:63613400-63618600	Weak transcription	Osteobl	bone
24	chr11:63613400-63619000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:63613400-63619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:63613600-63618200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:63613600-63618400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:63613600-63619000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:63613800-63616800	Weak transcription	GM12878-XiMat	blood
30	chr11:63613800-63618200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:63613800-63618400	Weak transcription	K562	blood
32	chr11:63613800-63625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:63614200-63616800	Enhancers	Fetal Intestine Large	intestine
34	chr11:63614200-63617000	Enhancers	Esophagus	oesophagus
35	chr11:63614600-63616800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:63614600-63616800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:63614600-63617400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr11:63614600-63619600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr11:63614800-63616800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr11:63614800-63616800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:63614800-63621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:63615000-63617000	Enhancers	Spleen	Spleen
43	chr11:63615000-63618000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:63615000-63618400	Weak transcription	Liver	Liver
45	chr11:63615200-63617200	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr11:63615200-63619000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:63615400-63617000	Enhancers	H1 Cell Line	embryonic stem cell
48	chr11:63615400-63618000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:63615400-63618200	Weak transcription	A549	lung
50	chr11:63615400-63618400	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links