Variant report

Variant	rs60725842
Chromosome Location	chr11:63713395-63713396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63683788..63684663-chr11:63713012..63713983,3	MCF-7	breast:
2	chr11:63683456..63690158-chr11:63704393..63714412,17	K562	blood:
3	chr11:63604405..63605358-chr11:63712971..63713992,6	K562	blood:
4	chr11:63679817..63682054-chr11:63713391..63715427,2	MCF-7	breast:
5	chr11:63683405..63684071-chr11:63712749..63713693,2	MCF-7	breast:
6	chr11:63711504..63713608-chr11:63716901..63718545,3	MCF-7	breast:
7	chr11:63704165..63707405-chr11:63709162..63713510,4	K562	blood:
8	chr11:63604963..63607370-chr11:63711128..63713455,3	MCF-7	breast:
9	chr11:63594404..63596969-chr11:63711957..63713589,2	MCF-7	breast:
10	chr11:63512721..63513749-chr11:63712605..63713796,3	MCF-7	breast:
11	chr11:63712151..63714978-chr11:63752248..63754050,2	K562	blood:
12	chr11:63604931..63605437-chr11:63712924..63713689,2	MCF-7	breast:
13	chr11:63682858..63685313-chr11:63711192..63714152,2	MCF-7	breast:
14	chr11:63712054..63714315-chr11:65194541..65196284,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000167770	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11825727	1.00[AMR][1000 genomes]
rs57058815	1.00[AMR][1000 genomes]
rs58822345	1.00[AMR][1000 genomes]
rs59054123	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59146342	1.00[AMR][1000 genomes]
rs61184552	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125886	1.00[AMR][1000 genomes]
rs73492260	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492262	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492266	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492273	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492274	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492287	1.00[AMR][1000 genomes]
rs73492297	1.00[AMR][1000 genomes]
rs73494110	1.00[AMR][1000 genomes]
rs73494112	1.00[AMR][1000 genomes]
rs73494126	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494128	1.00[AMR][1000 genomes]
rs73494144	1.00[AMR][1000 genomes]
rs73494160	1.00[AMR][1000 genomes]
rs73494167	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73494181	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496034	1.00[AMR][1000 genomes]
rs73496075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496090	1.00[AMR][1000 genomes]
rs73496096	1.00[AMR][1000 genomes]
rs73496099	1.00[AMR][1000 genomes]
rs73496100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63707200-63724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63707400-63713400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:63707400-63713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:63707400-63713800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:63707400-63719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:63707400-63721400	Weak transcription	Small Intestine	intestine
7	chr11:63707600-63713600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:63707600-63713800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:63707600-63713800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:63707600-63719400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:63707600-63720200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:63707800-63719200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:63707800-63719600	Weak transcription	Lung	lung
14	chr11:63708000-63713800	Weak transcription	HMEC	breast
15	chr11:63708000-63713800	Weak transcription	HUVEC	blood vessel
16	chr11:63708000-63714000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:63708000-63714000	Weak transcription	Gastric	stomach
18	chr11:63708000-63718200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:63708200-63713400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:63708200-63713600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:63708200-63713600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:63708200-63713800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:63708200-63723400	Weak transcription	NH-A	brain
24	chr11:63708400-63713800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:63708800-63713800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:63709000-63713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:63709000-63714000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:63709000-63719200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:63709400-63713400	Weak transcription	Primary B cells from cord blood	blood
30	chr11:63709400-63718800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:63709600-63719600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr11:63709800-63718200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:63710000-63713400	Genic enhancers	Fetal Intestine Small	intestine
34	chr11:63710200-63713400	Enhancers	Left Ventricle	heart
35	chr11:63710400-63713400	Enhancers	Brain Cingulate Gyrus	brain
36	chr11:63710400-63713600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr11:63710600-63715400	Strong transcription	Primary T cells from cord blood	blood
38	chr11:63711000-63713400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr11:63711200-63713400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:63711200-63713400	Enhancers	Right Ventricle	heart
41	chr11:63711400-63713400	Enhancers	Brain Substantia Nigra	brain
42	chr11:63711400-63713600	Enhancers	Fetal Heart	heart
43	chr11:63711800-63713400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr11:63711800-63713400	Enhancers	Brain Hippocampus Middle	brain
45	chr11:63711800-63713400	Genic enhancers	Fetal Stomach	stomach
46	chr11:63711800-63713400	Enhancers	NHLF	lung
47	chr11:63711800-63713600	Enhancers	Placenta Amnion	Placenta Amnion
48	chr11:63711800-63713600	Enhancers	HSMM	muscle
49	chr11:63712000-63713400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:63712000-63713400	Enhancers	Fetal Intestine Large	intestine

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