Variant report
Variant | rs59166979 |
---|---|
Chromosome Location | chr7:13696702-13696703 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11975756 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12112680 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12113852 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs17649841 | 0.85[ASN][1000 genomes] |
rs17650244 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1942128 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2217613 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4719374 | 0.86[ASN][1000 genomes] |
rs57726468 | 0.84[ASN][1000 genomes] |
rs59152261 | 0.84[ASN][1000 genomes] |
rs59700575 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs73055962 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs73055964 | 0.85[ASN][1000 genomes] |
rs73058156 | 0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv887690 | chr7:13591197-13702169 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
2 | nsv1026929 | chr7:13597929-13716063 | Enhancers ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv1023839 | chr7:13617615-13735946 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv887692 | chr7:13641674-13718969 | Enhancers Weak transcription ZNF genes & repeats Active TSS | lncRNA | n/a | inside rSNPs | diseases |
5 | nsv1017756 | chr7:13656136-13733606 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv1017322 | chr7:13661784-13733606 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv887693 | chr7:13673538-13718969 | Weak transcription Enhancers ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
8 | nsv1029362 | chr7:13679503-13733647 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv887694 | chr7:13680696-13718969 | ZNF genes & repeats Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
10 | nsv1023309 | chr7:13689412-13706565 | ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
11 | nsv1033492 | chr7:13690422-13746454 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
12 | nsv830909 | chr7:13692329-13868294 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:13688600-13697600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
2 | chr7:13696200-13697800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
3 | chr7:13696200-13698000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |