Variant report

Variant	rs59170404
Chromosome Location	chr6:2111300-2111301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:2110933..2112552-chr6:2126239..2128267,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11961278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968679	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56718691	1.00[AMR][1000 genomes]
rs56951103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915040	1.00[AMR][1000 genomes]
rs9501799	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
4	nsv883386	chr6:1910108-2122454	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522608	chr6:2032259-2203888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1019227	chr6:2038843-2142395	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv538097	chr6:2038843-2142395	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1025814	chr6:2064629-2308518	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv538098	chr6:2064629-2308518	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
10	nsv1030181	chr6:2071210-2308657	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
11	nsv538099	chr6:2071210-2308657	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
12	nsv883387	chr6:2086679-2176239	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
14	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
15	nsv519587	chr6:2097654-2145447	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv969343	chr6:2108400-2134218	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2065000-2117400	Weak transcription	Pancreas	Pancrea
2	chr6:2081200-2113000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:2081600-2131800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:2088800-2112200	Weak transcription	Small Intestine	intestine
5	chr6:2104400-2132000	Weak transcription	Fetal Intestine Large	intestine
6	chr6:2104600-2112000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:2104600-2116600	Weak transcription	Dnd41	blood
8	chr6:2104600-2128200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:2104800-2112200	Weak transcription	Left Ventricle	heart
10	chr6:2105200-2123400	Weak transcription	Gastric	stomach
11	chr6:2107400-2116800	Weak transcription	Colonic Mucosa	Colon
12	chr6:2107800-2111800	Weak transcription	Fetal Stomach	stomach
13	chr6:2108000-2111600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:2108000-2126400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:2108200-2113000	Weak transcription	Esophagus	oesophagus
16	chr6:2108800-2118600	Strong transcription	HepG2	liver
17	chr6:2109600-2127800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:2109600-2133600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:2110000-2117400	Weak transcription	Primary T cells from cord blood	blood
20	chr6:2110200-2111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:2110200-2129000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:2110600-2111600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:2110600-2111600	Flanking Active TSS	Osteobl	bone
24	chr6:2110600-2112400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:2110600-2112400	Enhancers	Adipose Nuclei	Adipose
26	chr6:2110800-2111400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:2110800-2111600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:2110800-2111600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:2110800-2111600	Flanking Active TSS	GM12878-XiMat	blood
30	chr6:2110800-2111600	Flanking Active TSS	HUVEC	blood vessel
31	chr6:2110800-2111800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:2110800-2112000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:2110800-2112000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:2110800-2112000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:2110800-2112000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:2110800-2112000	Enhancers	HMEC	breast
37	chr6:2110800-2112000	Enhancers	HSMM	muscle
38	chr6:2110800-2112000	Enhancers	NHDF-Ad	bronchial
39	chr6:2110800-2112200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:2110800-2112400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:2110800-2112400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:2111000-2111400	Active TSS	Aorta	Aorta
43	chr6:2111000-2111400	Active TSS	NHLF	lung
44	chr6:2111000-2111600	Enhancers	Stomach Mucosa	stomach
45	chr6:2111000-2111600	Enhancers	Hela-S3	cervix
46	chr6:2111000-2111800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:2111000-2111800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:2111000-2112000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:2111200-2111400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:2111200-2111400	Flanking Active TSS	Brain Anterior Caudate	brain

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