Variant report

Variant	rs59225459
Chromosome Location	chr8:130693743-130693744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:130693625-130695550	HL-60	blood:	n/a	n/a
2	CTCF	chr8:130693728-130695261	A549	lung:	n/a	chr8:130694449-130694467 chr8:130694444-130694465
3	CTCF	chr8:130693732-130694830	SK-N-SH	brain:	n/a	chr8:130694449-130694467 chr8:130694444-130694465

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130692959..130695780-chr8:130701945..130704433,2	K562	blood:

Variant related genes	Relation type
CCDC26	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10099422	0.89[EUR][1000 genomes]
rs10101101	0.98[ASN][1000 genomes]
rs12707937	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13250001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250057	1.00[AFR][1000 genomes]
rs13256760	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13263733	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13264700	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13265576	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13267039	0.89[EUR][1000 genomes]
rs13267746	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13280368	0.82[EUR][1000 genomes]
rs34092021	1.00[AFR][1000 genomes]
rs34390591	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34716000	1.00[AFR][1000 genomes]
rs34728826	1.00[AFR][1000 genomes]
rs34865413	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35125576	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35509786	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35778967	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56049814	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60812642	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66910128	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67986379	0.89[EUR][1000 genomes]
rs68077667	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6998742	0.89[EUR][1000 genomes]
rs7004790	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72716385	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72716391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841674	0.89[EUR][1000 genomes]
rs9297796	0.89[EUR][1000 genomes]
rs9918807	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130682600-130694000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:130688200-130693800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:130689200-130694000	Weak transcription	Osteobl	bone
4	chr8:130689400-130697400	Weak transcription	HMEC	breast
5	chr8:130689600-130694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:130689800-130694000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:130689800-130694000	Enhancers	Dnd41	blood
8	chr8:130690000-130694000	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:130691200-130693800	Weak transcription	A549	lung
10	chr8:130691200-130694800	Enhancers	NHDF-Ad	bronchial
11	chr8:130691400-130694200	Enhancers	K562	blood
12	chr8:130691600-130694000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:130691600-130694000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:130691800-130694000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:130691800-130694000	Weak transcription	GM12878-XiMat	blood
16	chr8:130691800-130695800	Weak transcription	Spleen	Spleen
17	chr8:130691800-130697200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:130691800-130697800	Weak transcription	Lung	lung
19	chr8:130692000-130693800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr8:130692000-130693800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr8:130692000-130693800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr8:130692000-130694000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:130692000-130694000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:130692000-130694000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:130692000-130694000	Weak transcription	Placenta	Placenta
26	chr8:130692200-130694200	Weak transcription	NH-A	brain
27	chr8:130692400-130693800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr8:130692400-130694000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:130692400-130694200	Enhancers	HSMMtube	muscle
30	chr8:130692400-130694800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:130692400-130698000	Weak transcription	Psoas Muscle	Psoas
32	chr8:130692600-130693800	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:130692600-130693800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:130692600-130693800	Weak transcription	NHLF	lung
35	chr8:130692600-130694000	Weak transcription	Fetal Heart	heart
36	chr8:130692600-130697000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:130692600-130698000	Weak transcription	Right Ventricle	heart
38	chr8:130692800-130693800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:130692800-130694000	Weak transcription	Fetal Stomach	stomach
40	chr8:130693400-130694800	Enhancers	Primary hematopoietic stem cells	blood
41	chr8:130693400-130695000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr8:130693600-130694200	Enhancers	HSMM	muscle
43	chr8:130693600-130694400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:130693600-130694400	Enhancers	Fetal Lung	lung
45	chr8:130693600-130695200	Enhancers	Fetal Thymus	thymus

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