Variant report

Variant	rs67986379
Chromosome Location	chr8:130667601-130667602
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130660996..130663314-chr8:130665198..130667685,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10099422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12707937	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13250001	0.89[EUR][1000 genomes]
rs13256760	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13263733	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13264700	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13265576	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13267039	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13267746	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13280368	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34092021	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34319381	0.94[ASN][1000 genomes]
rs34390591	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34716000	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34865413	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35125576	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35226520	0.81[ASN][1000 genomes]
rs35509786	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35577995	0.94[ASN][1000 genomes]
rs35778967	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4382437	0.92[ASN][1000 genomes]
rs56049814	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59225459	0.89[EUR][1000 genomes]
rs59672682	0.93[ASN][1000 genomes]
rs60812642	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62523768	0.93[ASN][1000 genomes]
rs66910128	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68077667	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6998742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7004790	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72716385	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72716391	0.89[EUR][1000 genomes]
rs7841674	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9297796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9918807	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130666200-130668600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:130666800-130668600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:130667000-130668000	Enhancers	Dnd41	blood
4	chr8:130667000-130668600	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:130667200-130668600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130667600-130667800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:130667600-130668000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr8:130667600-130668200	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links