Variant report

Variant	rs66910128
Chromosome Location	chr8:130662154-130662155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130660996..130663314-chr8:130665198..130667685,2	MCF-7	breast:
2	chr8:130661192..130664016-chr8:130665123..130667004,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10099422	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12707937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13250001	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13250057	1.00[AFR][1000 genomes]
rs13256760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13265576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13267039	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13267746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13280368	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34092021	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34319381	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34390591	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34716000	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34728826	1.00[AFR][1000 genomes]
rs34865413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35125576	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35226520	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35509786	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35577995	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35778967	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4382437	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56049814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59225459	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59672682	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60812642	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62523768	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs67986379	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68077667	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6998742	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7004790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72716385	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72716391	0.84[EUR][1000 genomes]
rs7841674	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297796	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9918807	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130661800-130663000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:130662000-130662200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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