Variant report

Variant	rs13267039
Chromosome Location	chr8:130682387-130682388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10099422	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12707937	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13250001	0.89[EUR][1000 genomes]
rs13256760	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13263733	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13264700	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13265576	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13267746	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13280368	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34092021	0.89[EUR][1000 genomes]
rs34319381	0.82[ASN][1000 genomes]
rs34390591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34716000	0.89[EUR][1000 genomes]
rs34865413	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35125576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35509786	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35577995	0.82[ASN][1000 genomes]
rs35778967	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4382437	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[ASN][1000 genomes]
rs56049814	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59225459	0.89[EUR][1000 genomes]
rs59672682	0.81[ASN][1000 genomes]
rs60812642	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62523768	0.81[ASN][1000 genomes]
rs66910128	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67986379	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68077667	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6998742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7004790	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72716385	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72716391	0.89[EUR][1000 genomes]
rs7841674	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9297796	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9918807	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130680400-130683000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr8:130680600-130682600	ZNF genes & repeats	Dnd41	blood
3	chr8:130681400-130682400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:130681400-130682400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr8:130681600-130682400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:130681600-130684600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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