Variant report

Variant	rs59275441
Chromosome Location	chr8:108061503-108061504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs16875203	1.00[AMR][1000 genomes]
rs16875237	1.00[AMR][1000 genomes]
rs16875240	1.00[AMR][1000 genomes]
rs16875403	1.00[EUR][1000 genomes]
rs16875461	1.00[EUR][1000 genomes]
rs16875466	1.00[EUR][1000 genomes]
rs16875479	1.00[EUR][1000 genomes]
rs55756535	1.00[EUR][1000 genomes]
rs55803830	1.00[EUR][1000 genomes]
rs55897111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56107939	1.00[AMR][1000 genomes]
rs56224374	1.00[AMR][1000 genomes]
rs56373658	1.00[AMR][1000 genomes]
rs57210590	1.00[EUR][1000 genomes]
rs57488998	1.00[AMR][1000 genomes]
rs57637160	1.00[AMR][1000 genomes]
rs57668239	1.00[EUR][1000 genomes]
rs57746942	1.00[AMR][1000 genomes]
rs57899268	1.00[EUR][1000 genomes]
rs59045856	1.00[AMR][1000 genomes]
rs59135682	1.00[EUR][1000 genomes]
rs59178284	1.00[AMR][1000 genomes]
rs59235398	1.00[EUR][1000 genomes]
rs59901092	1.00[AMR][1000 genomes]
rs60857656	1.00[AMR][1000 genomes]
rs61039493	1.00[EUR][1000 genomes]
rs61218099	1.00[AMR][1000 genomes]
rs6993168	1.00[AMR][1000 genomes]
rs73699609	1.00[AMR][1000 genomes]
rs73699611	1.00[AMR][1000 genomes]
rs73699612	1.00[AMR][1000 genomes]
rs73699613	1.00[AMR][1000 genomes]
rs73699614	1.00[AMR][1000 genomes]
rs73699615	1.00[AMR][1000 genomes]
rs73699616	1.00[AMR][1000 genomes]
rs73699618	1.00[AMR][1000 genomes]
rs73699633	1.00[EUR][1000 genomes]
rs73699634	1.00[EUR][1000 genomes]
rs73699664	1.00[AMR][1000 genomes]
rs73699666	1.00[EUR][1000 genomes]
rs73699667	1.00[EUR][1000 genomes]
rs73699669	1.00[EUR][1000 genomes]
rs73699670	1.00[EUR][1000 genomes]
rs73699672	1.00[EUR][1000 genomes]
rs73699673	1.00[EUR][1000 genomes]
rs73699676	1.00[EUR][1000 genomes]
rs73699677	1.00[EUR][1000 genomes]
rs73699679	1.00[EUR][1000 genomes]
rs73699680	1.00[AMR][1000 genomes]
rs73699685	1.00[EUR][1000 genomes]
rs73699686	1.00[EUR][1000 genomes]
rs73699687	1.00[EUR][1000 genomes]
rs73701755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73702459	1.00[AMR][1000 genomes]
rs73702460	1.00[AMR][1000 genomes]
rs73702463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1018159	chr8:108007543-108070058	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3444219	chr8:108049825-108069307	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3391198	chr8:108050825-108080952	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108058600-108062000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:108060800-108061800	Enhancers	Fetal Intestine Small	intestine

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