Variant report

Variant	rs73699664
Chromosome Location	chr8:107994650-107994651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16875203	1.00[AMR][1000 genomes]
rs16875237	1.00[AMR][1000 genomes]
rs16875240	1.00[AMR][1000 genomes]
rs55897111	1.00[AMR][1000 genomes]
rs56107939	1.00[AMR][1000 genomes]
rs56224374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56373658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57488998	1.00[AMR][1000 genomes]
rs57637160	1.00[AMR][1000 genomes]
rs57746942	1.00[AMR][1000 genomes]
rs58384262	0.90[AFR][1000 genomes]
rs59045856	1.00[AMR][1000 genomes]
rs59178284	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59275441	1.00[AMR][1000 genomes]
rs59392221	0.90[AFR][1000 genomes]
rs59901092	1.00[AMR][1000 genomes]
rs60857656	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61218099	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6993168	1.00[AMR][1000 genomes]
rs73699609	1.00[AMR][1000 genomes]
rs73699611	1.00[AMR][1000 genomes]
rs73699612	1.00[AMR][1000 genomes]
rs73699613	1.00[AMR][1000 genomes]
rs73699614	1.00[AMR][1000 genomes]
rs73699615	1.00[AMR][1000 genomes]
rs73699616	1.00[AMR][1000 genomes]
rs73699618	1.00[AMR][1000 genomes]
rs73699680	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701755	1.00[AMR][1000 genomes]
rs73702449	1.00[AMR][1000 genomes]
rs73702459	1.00[AMR][1000 genomes]
rs73702460	1.00[AMR][1000 genomes]
rs73702463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107987400-107998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107987800-107995400	Weak transcription	Aorta	Aorta
3	chr8:107993000-107995200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:107993200-107995200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:107993400-107995200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:107993600-107994800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:107993600-107995200	Weak transcription	Fetal Intestine Small	intestine
8	chr8:107994000-107995000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:107994200-107995200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:107994200-107995400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:107994400-107994800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:107994400-107995400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:107994600-107995000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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