Variant report

Variant	rs73699611
Chromosome Location	chr8:107903280-107903281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16875203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16875237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16875240	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55897111	1.00[AMR][1000 genomes]
rs56107939	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56224374	1.00[AMR][1000 genomes]
rs56373658	1.00[AMR][1000 genomes]
rs57488998	1.00[AMR][1000 genomes]
rs57637160	1.00[AMR][1000 genomes]
rs57746942	1.00[AMR][1000 genomes]
rs59045856	1.00[AMR][1000 genomes]
rs59178284	1.00[AMR][1000 genomes]
rs59275441	1.00[AMR][1000 genomes]
rs59901092	1.00[AMR][1000 genomes]
rs60857656	1.00[AMR][1000 genomes]
rs61218099	1.00[AMR][1000 genomes]
rs6993168	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699609	1.00[AMR][1000 genomes]
rs73699612	1.00[AMR][1000 genomes]
rs73699613	1.00[AMR][1000 genomes]
rs73699614	1.00[AMR][1000 genomes]
rs73699615	1.00[AMR][1000 genomes]
rs73699616	1.00[AMR][1000 genomes]
rs73699618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73699664	1.00[AMR][1000 genomes]
rs73699680	1.00[AMR][1000 genomes]
rs73701755	1.00[AMR][1000 genomes]
rs73702449	1.00[AMR][1000 genomes]
rs73702459	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73702460	1.00[AMR][1000 genomes]
rs73702463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv891265	chr8:107880864-107921739	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1796188	chr8:107900966-107928113	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107884000-107904600	Weak transcription	Psoas Muscle	Psoas
2	chr8:107900400-107905000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107901000-107904600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:107901400-107903800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:107901600-107903400	Enhancers	NHEK	skin
6	chr8:107901600-107904200	Enhancers	NHDF-Ad	bronchial
7	chr8:107901800-107904000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:107901800-107904200	Enhancers	Osteobl	bone
9	chr8:107902000-107904200	Enhancers	NH-A	brain
10	chr8:107902000-107904600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:107902400-107903400	Enhancers	HMEC	breast
12	chr8:107902400-107903400	Enhancers	NHLF	lung
13	chr8:107902600-107903400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:107902600-107903400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:107903000-107904000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:107903000-107904000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:107903000-107904000	Weak transcription	HSMM	muscle
18	chr8:107903000-107904200	Weak transcription	HSMMtube	muscle
19	chr8:107903000-107904600	Weak transcription	Aorta	Aorta
20	chr8:107903200-107904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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