Variant report

Variant	rs59307773
Chromosome Location	chr6:144050166-144050167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11155321	0.87[ASN][1000 genomes]
rs12208670	0.85[ASN][1000 genomes]
rs12216126	0.85[ASN][1000 genomes]
rs1342331	0.85[ASN][1000 genomes]
rs72556977	0.88[ASN][1000 genomes]
rs7738300	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7738780	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9484805	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
2	chr6:144022200-144052600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:144022800-144052800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:144022800-144064200	Weak transcription	NH-A	brain
7	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:144024600-144052800	Weak transcription	Osteobl	bone
9	chr6:144027600-144052600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:144028000-144054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:144028200-144052800	Weak transcription	Stomach Mucosa	stomach
13	chr6:144031000-144054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:144031400-144054000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:144033000-144052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:144034600-144054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:144035200-144054400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:144035600-144054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:144036600-144053000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:144038000-144054200	Weak transcription	Right Ventricle	heart
23	chr6:144038200-144063400	Weak transcription	HepG2	liver
24	chr6:144038600-144075400	Weak transcription	NHEK	skin
25	chr6:144038800-144053200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:144039400-144053800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:144039800-144053800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:144039800-144055600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:144042000-144051800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:144042000-144063400	Weak transcription	Lung	lung
31	chr6:144042200-144056000	Weak transcription	Liver	Liver
32	chr6:144042400-144053200	Weak transcription	Adipose Nuclei	Adipose
33	chr6:144043000-144054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:144044800-144053400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:144044800-144053800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:144045000-144053200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:144045000-144054600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:144045000-144054800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:144046000-144053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:144046000-144057400	Weak transcription	Left Ventricle	heart
41	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr6:144046200-144050200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:144046200-144057200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr6:144046400-144058800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:144047000-144054600	Weak transcription	Fetal Stomach	stomach
47	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
48	chr6:144047200-144055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:144047400-144055600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:144047400-144055600	Weak transcription	Fetal Lung	lung

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