Variant report

Variant	rs11155321
Chromosome Location	chr6:144061777-144061778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144060296..144062270-chr6:144062738..144065749,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10484829	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11155323	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11752220	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11962678	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs12197846	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs12207527	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12208670	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12216126	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1342331	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17521652	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1935497	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs2235995	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2273211	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2281405	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818113	0.95[CEU][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55935224	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59307773	0.87[ASN][1000 genomes]
rs72556977	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72556986	0.94[EUR][1000 genomes]
rs736784	0.89[CEU][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs736785	0.95[CEU][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7738780	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144064200	Weak transcription	NH-A	brain
3	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:144038200-144063400	Weak transcription	HepG2	liver
7	chr6:144038600-144075400	Weak transcription	NHEK	skin
8	chr6:144042000-144063400	Weak transcription	Lung	lung
9	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
14	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
15	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:144053600-144073600	Weak transcription	Osteobl	bone
19	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:144055600-144063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:144055800-144063200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:144056000-144063800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:144056000-144065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:144056000-144067600	Weak transcription	K562	blood
27	chr6:144056200-144063400	Weak transcription	Fetal Heart	heart
28	chr6:144056200-144063800	Weak transcription	Fetal Kidney	kidney
29	chr6:144056200-144064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:144056800-144063400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:144056800-144063600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:144056800-144065600	Weak transcription	HUVEC	blood vessel
34	chr6:144057000-144061800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr6:144057000-144063600	Weak transcription	Fetal Lung	lung
36	chr6:144057400-144064200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:144057600-144063400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:144057600-144063400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:144057600-144063400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:144057600-144063800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:144058000-144063400	Weak transcription	Left Ventricle	heart
42	chr6:144058000-144064400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:144058200-144063400	Weak transcription	Psoas Muscle	Psoas
44	chr6:144058800-144063400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:144059200-144064000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr6:144059800-144063600	Weak transcription	Aorta	Aorta
47	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:144060000-144066400	Weak transcription	Fetal Brain Female	brain
49	chr6:144060200-144065200	Enhancers	Placenta	Placenta
50	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links