Variant report

Variant	rs11752220
Chromosome Location	chr6:144092596-144092597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144091837..144094429-chr6:144095791..144097571,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484829	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155321	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11155323	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11962678	0.88[EUR][1000 genomes]
rs12197846	0.89[EUR][1000 genomes]
rs12207527	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12208670	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216126	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1342331	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17521652	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935497	0.88[EUR][1000 genomes]
rs2235995	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2273211	0.89[EUR][1000 genomes]
rs2281405	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3818113	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55935224	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72556986	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs736784	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs736785	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3356440	chr6:144091559-144093557	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144067800-144095400	Weak transcription	NHLF	lung
2	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
3	chr6:144069400-144097800	Weak transcription	Gastric	stomach
4	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
5	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
6	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:144072600-144106400	Weak transcription	HMEC	breast
9	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:144077200-144093600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:144077200-144095400	Weak transcription	Primary B cells from cord blood	blood
12	chr6:144077400-144095000	Weak transcription	NHEK	skin
13	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
14	chr6:144079000-144092800	Weak transcription	Fetal Kidney	kidney
15	chr6:144079000-144099600	Weak transcription	K562	blood
16	chr6:144079200-144093000	Weak transcription	HSMM	muscle
17	chr6:144079200-144095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:144080600-144095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:144080600-144101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:144080600-144122000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:144081200-144096400	Weak transcription	Brain Angular Gyrus	brain
22	chr6:144081800-144095200	Weak transcription	Psoas Muscle	Psoas
23	chr6:144081800-144097600	Weak transcription	Esophagus	oesophagus
24	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
25	chr6:144083800-144098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:144085000-144113800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:144085200-144113800	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:144086200-144099000	Weak transcription	Thymus	Thymus
29	chr6:144086200-144105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:144086600-144106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:144087000-144093000	Weak transcription	HUVEC	blood vessel
32	chr6:144087000-144094600	Weak transcription	HepG2	liver
33	chr6:144087000-144095000	Weak transcription	Aorta	Aorta
34	chr6:144087000-144106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:144087000-144122000	Weak transcription	Pancreas	Pancrea
36	chr6:144087200-144093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:144087200-144093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:144087200-144095000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:144087200-144097800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:144087200-144106000	Weak transcription	Spleen	Spleen
41	chr6:144087400-144093200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:144087600-144096200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:144087800-144092800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:144087800-144093000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:144087800-144094600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:144088000-144092800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:144088000-144093000	Weak transcription	Ovary	ovary
48	chr6:144088000-144093200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr6:144088000-144093200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:144088000-144094600	Weak transcription	Fetal Heart	heart

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