Variant report

Variant	rs10484829
Chromosome Location	chr6:144083799-144083800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144076953..144079572-chr6:144081415..144086815,4	K562	blood:
2	chr6:144083699..144085965-chr6:144088536..144091208,2	K562	blood:
3	chr6:144071798..144073720-chr6:144082492..144084536,2	MCF-7	breast:
4	chr6:144080993..144084686-chr6:144086462..144088347,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11155321	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11155323	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11752220	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11962678	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs12197846	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs12207527	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12208670	1.00[ASW][hapmap];0.89[CEU][hapmap];0.85[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12216126	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1342330	0.87[JPT][hapmap]
rs1342331	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17521652	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935497	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs2235995	0.80[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2273211	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2281405	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3818113	1.00[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55935224	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72556986	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs736784	1.00[ASW][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs736785	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9403528	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:144067600-144087400	Weak transcription	NH-A	brain
5	chr6:144067800-144086400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:144067800-144095400	Weak transcription	NHLF	lung
7	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
8	chr6:144068000-144086400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:144068600-144086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:144069200-144087200	Weak transcription	Fetal Heart	heart
11	chr6:144069400-144097800	Weak transcription	Gastric	stomach
12	chr6:144069600-144085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
14	chr6:144069800-144086400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
16	chr6:144070600-144086400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:144072600-144086400	Weak transcription	Right Ventricle	heart
19	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:144072600-144106400	Weak transcription	HMEC	breast
21	chr6:144072800-144086400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:144074200-144087200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:144075000-144085800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:144076800-144086400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:144077200-144086400	Weak transcription	Ovary	ovary
27	chr6:144077200-144086600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:144077200-144087600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:144077200-144088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:144077200-144093600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:144077200-144095400	Weak transcription	Primary B cells from cord blood	blood
32	chr6:144077400-144086000	Weak transcription	Liver	Liver
33	chr6:144077400-144095000	Weak transcription	NHEK	skin
34	chr6:144077600-144086400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
36	chr6:144078600-144086000	Strong transcription	Placenta	Placenta
37	chr6:144078800-144084600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:144078800-144086000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:144078800-144086000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:144079000-144084600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:144079000-144085800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:144079000-144085800	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:144079000-144086400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:144079000-144086400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:144079000-144092800	Weak transcription	Fetal Kidney	kidney
46	chr6:144079000-144099600	Weak transcription	K562	blood
47	chr6:144079200-144084600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:144079200-144085800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr6:144079200-144086400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:144079200-144086400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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