Variant report

Variant	rs17521652
Chromosome Location	chr6:144073636-144073637
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144071732..144074823-chr6:144075904..144078859,3	MCF-7	breast:
2	chr6:144071798..144073720-chr6:144082492..144084536,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484829	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155321	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11155323	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11752220	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11962678	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12197846	0.99[EUR][1000 genomes]
rs12207527	0.85[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12208670	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12216126	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1342331	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1935497	0.98[EUR][1000 genomes]
rs2235995	0.80[CHB][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273211	0.99[EUR][1000 genomes]
rs2281405	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3818113	0.84[CHB][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55935224	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72556977	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72556986	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736784	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs736785	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144038600-144075400	Weak transcription	NHEK	skin
2	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:144060600-144074600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:144060800-144074400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:144061000-144079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:144063000-144075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:144063600-144076600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:144063800-144075000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:144064400-144074400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:144064600-144076800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:144064800-144075400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:144066400-144076400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:144066600-144075400	Weak transcription	Liver	Liver
24	chr6:144066600-144081000	Weak transcription	Esophagus	oesophagus
25	chr6:144066800-144080600	Weak transcription	Spleen	Spleen
26	chr6:144067000-144075800	Weak transcription	HUVEC	blood vessel
27	chr6:144067000-144076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:144067000-144077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:144067000-144081000	Weak transcription	Brain Angular Gyrus	brain
30	chr6:144067000-144083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:144067200-144073800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:144067400-144076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:144067400-144078400	Weak transcription	NHDF-Ad	bronchial
34	chr6:144067600-144087400	Weak transcription	NH-A	brain
35	chr6:144067800-144076000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:144067800-144076400	Weak transcription	Lung	lung
37	chr6:144067800-144076800	Weak transcription	HSMMtube	muscle
38	chr6:144067800-144077000	Weak transcription	HSMM	muscle
39	chr6:144067800-144078400	Weak transcription	Adipose Nuclei	Adipose
40	chr6:144067800-144086400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:144067800-144095400	Weak transcription	NHLF	lung
42	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
43	chr6:144068000-144086400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:144068200-144078400	Weak transcription	Fetal Kidney	kidney
45	chr6:144068600-144086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:144068800-144074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:144068800-144075200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:144068800-144075400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:144068800-144075400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:144068800-144079000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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