Variant report

Variant	rs55935224
Chromosome Location	chr6:144082662-144082663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144076953..144079572-chr6:144081415..144086815,4	K562	blood:
2	chr6:144071798..144073720-chr6:144082492..144084536,2	MCF-7	breast:
3	chr6:144080993..144084686-chr6:144086462..144088347,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484829	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11155321	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11155323	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11752220	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11962678	0.90[EUR][1000 genomes]
rs12197846	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12207527	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12208670	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12216126	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1342331	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17521652	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1935497	0.90[EUR][1000 genomes]
rs2235995	0.88[AMR][1000 genomes]
rs2273211	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2281405	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3818113	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72556977	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72556986	0.91[EUR][1000 genomes]
rs736784	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs736785	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:144067000-144083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:144067600-144087400	Weak transcription	NH-A	brain
6	chr6:144067800-144086400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:144067800-144095400	Weak transcription	NHLF	lung
8	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
9	chr6:144068000-144086400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:144068600-144086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:144069200-144087200	Weak transcription	Fetal Heart	heart
12	chr6:144069400-144097800	Weak transcription	Gastric	stomach
13	chr6:144069600-144085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
15	chr6:144069800-144086400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
17	chr6:144070600-144086400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:144072600-144086400	Weak transcription	Right Ventricle	heart
20	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:144072600-144106400	Weak transcription	HMEC	breast
22	chr6:144072800-144086400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:144074200-144087200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:144074600-144083000	Strong transcription	Fetal Intestine Large	intestine
26	chr6:144075000-144085800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:144076800-144086400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:144077200-144086400	Weak transcription	Ovary	ovary
29	chr6:144077200-144086600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:144077200-144087600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:144077200-144088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:144077200-144093600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:144077200-144095400	Weak transcription	Primary B cells from cord blood	blood
34	chr6:144077400-144086000	Weak transcription	Liver	Liver
35	chr6:144077400-144095000	Weak transcription	NHEK	skin
36	chr6:144077600-144086400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
38	chr6:144078600-144086000	Strong transcription	Placenta	Placenta
39	chr6:144078800-144084600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:144078800-144086000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:144078800-144086000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:144079000-144084600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:144079000-144085800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:144079000-144085800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:144079000-144086400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:144079000-144086400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:144079000-144092800	Weak transcription	Fetal Kidney	kidney
48	chr6:144079000-144099600	Weak transcription	K562	blood
49	chr6:144079200-144084600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:144079200-144085800	Weak transcription	Stomach Smooth Muscle	stomach

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