Variant report

Variant	rs12197846
Chromosome Location	chr6:144075801-144075802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143993282..143995063-chr6:144073784..144075986,2	MCF-7	breast:
2	chr6:144075659..144077408-chr6:144078604..144081076,2	K562	blood:
3	chr6:144071724..144073521-chr6:144074905..144077250,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484829	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11155321	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs11155323	0.98[EUR][1000 genomes]
rs11752220	0.89[EUR][1000 genomes]
rs11962678	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12207527	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12208670	0.96[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs12216126	0.95[EUR][1000 genomes]
rs1342331	0.96[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs17521652	0.99[EUR][1000 genomes]
rs1935497	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2235995	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2273211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281405	0.87[EUR][1000 genomes]
rs3818113	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs55935224	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72556986	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs736784	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs736785	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9484805	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:144061000-144079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:144063600-144076600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:144064600-144076800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:144066400-144076400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:144066600-144081000	Weak transcription	Esophagus	oesophagus
14	chr6:144066800-144080600	Weak transcription	Spleen	Spleen
15	chr6:144067000-144076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:144067000-144077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:144067000-144081000	Weak transcription	Brain Angular Gyrus	brain
18	chr6:144067000-144083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:144067400-144076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:144067400-144078400	Weak transcription	NHDF-Ad	bronchial
21	chr6:144067600-144087400	Weak transcription	NH-A	brain
22	chr6:144067800-144076000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:144067800-144076400	Weak transcription	Lung	lung
24	chr6:144067800-144076800	Weak transcription	HSMMtube	muscle
25	chr6:144067800-144077000	Weak transcription	HSMM	muscle
26	chr6:144067800-144078400	Weak transcription	Adipose Nuclei	Adipose
27	chr6:144067800-144086400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:144067800-144095400	Weak transcription	NHLF	lung
29	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
30	chr6:144068000-144086400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:144068200-144078400	Weak transcription	Fetal Kidney	kidney
32	chr6:144068600-144086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:144068800-144079000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:144069000-144076400	Weak transcription	Fetal Stomach	stomach
35	chr6:144069000-144076600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:144069000-144076800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:144069000-144078400	Weak transcription	Pancreas	Pancrea
38	chr6:144069000-144081400	Weak transcription	Right Atrium	heart
39	chr6:144069200-144078200	Weak transcription	K562	blood
40	chr6:144069200-144078400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:144069200-144087200	Weak transcription	Fetal Heart	heart
42	chr6:144069400-144097800	Weak transcription	Gastric	stomach
43	chr6:144069600-144076600	Weak transcription	Primary B cells from cord blood	blood
44	chr6:144069600-144085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
46	chr6:144069800-144086400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
48	chr6:144070600-144086400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:144072600-144076400	Weak transcription	H9 Cell Line	embryonic stem cell

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