Variant report

Variant	rs2281405
Chromosome Location	chr6:144095755-144095756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144094412..144096220-chr6:144126094..144128720,2	K562	blood:

Variant related genes	Relation type
ENSG00000257065	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10484829	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155321	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11155323	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11752220	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11962678	0.86[EUR][1000 genomes]
rs12197846	0.87[EUR][1000 genomes]
rs12207527	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12208670	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12216126	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1342331	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17521652	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1935497	0.87[EUR][1000 genomes]
rs2235995	0.82[AMR][1000 genomes]
rs2273211	0.87[EUR][1000 genomes]
rs3818113	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55935224	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72556986	0.88[EUR][1000 genomes]
rs736784	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs736785	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
2	chr6:144069400-144097800	Weak transcription	Gastric	stomach
3	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
4	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:144072600-144106400	Weak transcription	HMEC	breast
6	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
8	chr6:144079000-144099600	Weak transcription	K562	blood
9	chr6:144080600-144101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:144080600-144122000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:144081200-144096400	Weak transcription	Brain Angular Gyrus	brain
12	chr6:144081800-144097600	Weak transcription	Esophagus	oesophagus
13	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
14	chr6:144083800-144098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:144085000-144113800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:144085200-144113800	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:144086200-144099000	Weak transcription	Thymus	Thymus
18	chr6:144086200-144105400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144086600-144106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:144087000-144106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:144087000-144122000	Weak transcription	Pancreas	Pancrea
22	chr6:144087200-144097800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:144087200-144106000	Weak transcription	Spleen	Spleen
24	chr6:144087600-144096200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:144088000-144095800	Weak transcription	Right Ventricle	heart
26	chr6:144088000-144106400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:144088600-144102800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:144088800-144113600	Weak transcription	A549	lung
29	chr6:144090000-144106400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:144091400-144103600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:144091600-144098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:144092600-144098400	Strong transcription	Fetal Intestine Small	intestine
33	chr6:144092600-144100000	Strong transcription	Fetal Intestine Large	intestine
34	chr6:144092800-144096600	Genic enhancers	Placenta	Placenta
35	chr6:144092800-144096600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:144092800-144097200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr6:144092800-144097200	Genic enhancers	Fetal Muscle Leg	muscle
38	chr6:144092800-144098000	Genic enhancers	Fetal Stomach	stomach
39	chr6:144092800-144100600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:144092800-144105400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:144092800-144106200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:144092800-144110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:144093000-144097000	Genic enhancers	Fetal Lung	lung
44	chr6:144093000-144099000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:144093000-144100400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:144093000-144102600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:144093000-144104600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:144093200-144096200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:144093200-144100200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr6:144093200-144102600	Strong transcription	Primary neutrophils fromperipheralblood	blood

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