Variant report

Variant	rs11155323
Chromosome Location	chr6:144080448-144080449
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144078322..144080514-chr6:144163039..144165218,2	K562	blood:
2	chr6:144075659..144077408-chr6:144078604..144081076,2	K562	blood:
3	chr6:144037482..144039752-chr6:144079011..144080855,2	K562	blood:

Variant related genes	Relation type
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484829	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155321	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11752220	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11962678	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12197846	0.98[EUR][1000 genomes]
rs12207527	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12208670	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12216126	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1342331	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17521652	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935497	0.98[EUR][1000 genomes]
rs2235995	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273211	0.98[EUR][1000 genomes]
rs2281405	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3818113	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55935224	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72556977	0.84[AFR][1000 genomes]
rs72556986	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs736784	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs736785	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144061000-144086600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144063800-144086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:144064800-144086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:144066600-144081000	Weak transcription	Esophagus	oesophagus
5	chr6:144066800-144080600	Weak transcription	Spleen	Spleen
6	chr6:144067000-144081000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:144067000-144083000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:144067600-144087400	Weak transcription	NH-A	brain
9	chr6:144067800-144086400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:144067800-144095400	Weak transcription	NHLF	lung
11	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
12	chr6:144068000-144086400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:144068600-144086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:144069000-144081400	Weak transcription	Right Atrium	heart
15	chr6:144069200-144087200	Weak transcription	Fetal Heart	heart
16	chr6:144069400-144097800	Weak transcription	Gastric	stomach
17	chr6:144069600-144085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
19	chr6:144069800-144086400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
21	chr6:144070600-144086400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:144072600-144086400	Weak transcription	Right Ventricle	heart
24	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:144072600-144106400	Weak transcription	HMEC	breast
26	chr6:144072800-144086400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:144074200-144087200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:144074600-144083000	Strong transcription	Fetal Intestine Large	intestine
30	chr6:144075000-144085800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:144075800-144081000	Weak transcription	Psoas Muscle	Psoas
32	chr6:144075800-144081000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:144076400-144081000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:144076800-144086400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:144077200-144081400	Weak transcription	Aorta	Aorta
36	chr6:144077200-144086400	Weak transcription	Ovary	ovary
37	chr6:144077200-144086600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr6:144077200-144087600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:144077200-144088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:144077200-144093600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:144077200-144095400	Weak transcription	Primary B cells from cord blood	blood
42	chr6:144077400-144081000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:144077400-144086000	Weak transcription	Liver	Liver
44	chr6:144077400-144095000	Weak transcription	NHEK	skin
45	chr6:144077600-144081000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:144077600-144081200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:144077600-144086400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
49	chr6:144078600-144086000	Strong transcription	Placenta	Placenta
50	chr6:144078800-144084600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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