Variant report

Variant	rs9484805
Chromosome Location	chr6:144058116-144058117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12197846	0.87[JPT][hapmap]
rs2273211	0.88[JPT][hapmap]
rs59307773	0.90[EUR][1000 genomes]
rs7738300	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7738780	0.95[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144064200	Weak transcription	NH-A	brain
3	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:144038200-144063400	Weak transcription	HepG2	liver
7	chr6:144038600-144075400	Weak transcription	NHEK	skin
8	chr6:144042000-144063400	Weak transcription	Lung	lung
9	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:144046400-144058800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
15	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
16	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:144049200-144060600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:144049800-144060600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:144052200-144061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:144053600-144073600	Weak transcription	Osteobl	bone
23	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:144054200-144059200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:144054800-144060400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:144054800-144061000	Weak transcription	Right Atrium	heart
29	chr6:144055600-144063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:144055800-144063200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:144056000-144063800	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:144056000-144065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:144056000-144067600	Weak transcription	K562	blood
34	chr6:144056200-144058800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:144056200-144059600	Weak transcription	Placenta	Placenta
36	chr6:144056200-144060800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:144056200-144063400	Weak transcription	Fetal Heart	heart
38	chr6:144056200-144063800	Weak transcription	Fetal Kidney	kidney
39	chr6:144056200-144064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:144056400-144060800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:144056400-144060800	Weak transcription	Fetal Stomach	stomach
43	chr6:144056800-144058400	Weak transcription	Stomach Mucosa	stomach
44	chr6:144056800-144063400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:144056800-144063600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:144056800-144065600	Weak transcription	HUVEC	blood vessel
47	chr6:144057000-144061800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr6:144057000-144063600	Weak transcription	Fetal Lung	lung
49	chr6:144057400-144061200	Weak transcription	Adipose Nuclei	Adipose
50	chr6:144057400-144064200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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