Variant report

Variant	rs7738780
Chromosome Location	chr6:144057125-144057126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11155321	0.94[ASN][1000 genomes]
rs12208670	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs12216126	0.91[ASN][1000 genomes]
rs1342331	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs59307773	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72556977	0.94[ASN][1000 genomes]
rs7738300	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9484805	0.95[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:144022800-144064200	Weak transcription	NH-A	brain
4	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:144038200-144063400	Weak transcription	HepG2	liver
8	chr6:144038600-144075400	Weak transcription	NHEK	skin
9	chr6:144042000-144063400	Weak transcription	Lung	lung
10	chr6:144046000-144057400	Weak transcription	Left Ventricle	heart
11	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:144046200-144057200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:144046400-144058800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
18	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
19	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:144049200-144060600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:144049800-144060600	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:144052200-144061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:144053200-144057600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:144053600-144073600	Weak transcription	Osteobl	bone
27	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:144054200-144059200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:144054400-144057400	Weak transcription	Psoas Muscle	Psoas
32	chr6:144054400-144057600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:144054400-144057600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:144054400-144057600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:144054400-144057600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr6:144054400-144057600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:144054400-144057600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:144054600-144057200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:144054800-144058000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr6:144054800-144060400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:144054800-144061000	Weak transcription	Right Atrium	heart
42	chr6:144055200-144058000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:144055600-144057400	Enhancers	Adipose Nuclei	Adipose
44	chr6:144055600-144063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:144055800-144057600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:144055800-144063200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:144056000-144057200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:144056000-144063800	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:144056000-144065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:144056000-144067600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links