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Variant report
Variant
rs5938419
Chromosome Location
chrX:75442230-75442231
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:1)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
FOXA2
chrX:75441921-75442235
A549
lung:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000237252
TF binding region
Extended variants information (count: 7 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:7)
rs_ID
r
2
[population]
rs12164341
0.81[JPT][hapmap]
rs2301862
0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2301863
0.81[JPT][hapmap]
rs242458
0.90[CEU][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs4892428
1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs5938407
0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs5981411
0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links