Variant report

Variant	rs5981411
Chromosome Location	chrX:75394090-75394091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:75393051..75395719-chrX:75400387..75402118,2	K562	blood:
2	chrX:75392822..75394392-chrX:75442645..75445451,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237252	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12156973	0.80[CEU][hapmap]
rs12164341	0.84[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap]
rs16992144	0.93[CEU][hapmap]
rs2301862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2301863	0.90[JPT][hapmap]
rs2367715	0.87[CEU][hapmap]
rs4892428	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs5938404	0.93[CEU][hapmap]
rs5938406	0.88[CEU][hapmap]
rs5938407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5938419	0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs5938489	0.86[CEU][hapmap]
rs6647953	0.93[CEU][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75391600-75394400	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chrX:75392000-75394600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chrX:75392000-75394800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chrX:75392000-75395800	Active TSS	GM12878-XiMat	blood
5	chrX:75392200-75394200	Active TSS	H9 Cell Line	embryonic stem cell
6	chrX:75392200-75394200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chrX:75392200-75394200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chrX:75392200-75394200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chrX:75392200-75394400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chrX:75392200-75394400	Active TSS	HSMMtube	muscle
11	chrX:75392200-75394600	Active TSS	Thymus	Thymus
12	chrX:75392200-75394600	Active TSS	A549	lung
13	chrX:75392200-75394600	Active TSS	NHDF-Ad	bronchial
14	chrX:75392200-75394800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chrX:75392200-75394800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chrX:75392200-75394800	Active TSS	Fetal Intestine Large	intestine
17	chrX:75392200-75395000	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chrX:75392200-75395200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chrX:75392400-75394200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chrX:75392400-75394200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chrX:75392400-75394200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chrX:75392400-75394200	Active TSS	Aorta	Aorta
23	chrX:75392400-75394200	Active TSS	Esophagus	oesophagus
24	chrX:75392400-75394200	Active TSS	Pancreas	Pancrea
25	chrX:75392400-75394400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chrX:75392400-75394400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chrX:75392400-75394600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chrX:75392400-75394600	Active TSS	Ovary	ovary
29	chrX:75392400-75394600	Active TSS	Right Atrium	heart
30	chrX:75392400-75394600	Active TSS	NHLF	lung
31	chrX:75392400-75394800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chrX:75392400-75394800	Active TSS	Right Ventricle	heart
33	chrX:75392400-75395200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chrX:75392400-75395200	Bivalent/Poised TSS	Fetal Brain Female	brain
35	chrX:75392600-75394200	Active TSS	Colonic Mucosa	Colon
36	chrX:75392600-75394200	Active TSS	Lung	lung
37	chrX:75392600-75394400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chrX:75392600-75394400	Active TSS	HepG2	liver
39	chrX:75392600-75394600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chrX:75392600-75394600	Active TSS	K562	blood
41	chrX:75392600-75394800	Active TSS	H1 Cell Line	embryonic stem cell
42	chrX:75392600-75394800	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chrX:75392600-75394800	Active TSS	Muscle Satellite Cultured Cells	--
44	chrX:75392600-75394800	Active TSS	HMEC	breast
45	chrX:75392600-75394800	Active TSS	NHEK	skin
46	chrX:75392600-75395000	Active TSS	Fetal Intestine Small	intestine
47	chrX:75392600-75395200	Active TSS	NH-A	brain
48	chrX:75392800-75394400	Active TSS	Fetal Brain Male	brain
49	chrX:75392800-75394800	Active TSS	Rectal Smooth Muscle	rectum
50	chrX:75393200-75394600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links