Variant report

Variant	rs5938404
Chromosome Location	chrX:75389174-75389175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12156973	0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs16992144	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2301862	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs2367715	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs4892428	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs5938406	1.00[CEU][hapmap]
rs5938407	0.94[CEU][hapmap]
rs5938489	0.92[CEU][hapmap]
rs5981411	0.93[CEU][hapmap]
rs6647953	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75388000-75391000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chrX:75388400-75392000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chrX:75388400-75392000	Weak transcription	HUVEC	blood vessel
4	chrX:75388400-75392000	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links