Variant report

Variant	rs12156973
Chromosome Location	chrX:75249257-75249258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chrX:75249183-75249604	K562	blood:	n/a	chrX:75249385-75249404 chrX:75249391-75249399 chrX:75249458-75249469 chrX:75249430-75249444 chrX:75249392-75249402 chrX:75249397-75249406 chrX:75249380-75249402
2	YY1	chrX:75249222-75249544	K562	blood:	n/a	chrX:75249385-75249404 chrX:75249391-75249399 chrX:75249458-75249469 chrX:75249430-75249444 chrX:75249392-75249402 chrX:75249397-75249406 chrX:75249380-75249402
3	MAX	chrX:75249167-75249655	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:75249222-75249272	GM19239	blood:	n/a
2	chrX:75249222-75249272	SK-N-SH	brain:	n/a
3	chrX:75249222-75249272	MCF10A-Er-Src	breast:	n/a
4	chrX:75249222-75249272	Jurkat	blood:	n/a
5	chrX:75249222-75249272	HUVEC	blood vessel:	n/a
6	chrX:75249222-75249272	PrEC	prostate:	n/a
7	chrX:75249222-75249272	HPAEpiC	pulmonary alveolar:	n/a
8	chrX:75249222-75249272	HMEC	breast:	n/a
9	chrX:75249222-75249272	Hela-S3	cervix:	n/a
10	chrX:75249222-75249272	SK-N-MC	brain:	n/a
11	chrX:75249222-75249272	MCF-7	breast:	n/a
12	chrX:75249222-75249272	CMK	blood:	n/a
13	chrX:75249222-75249272	NT2-D1	testis:	n/a
14	chrX:75249222-75249272	NH-A	brain:	n/a
15	chrX:75249222-75249272	AG10803	skin:	n/a
16	chrX:75249222-75249272	AG04449	skin:	fetal
17	chrX:75249222-75249272	T-47D	breast:	n/a
18	chrX:75249222-75249272	ProgFib	skin:	n/a
19	chrX:75249222-75249272	U87	brain:	n/a
20	chrX:75249222-75249272	A549	lung:	n/a
21	chrX:75249222-75249272	HIPEpiC	eye:	n/a
22	chrX:75249222-75249272	HEK293	kidney:	embryo
23	chrX:75249222-75249272	HEEpiC	esophagus:	n/a
24	chrX:75249222-75249272	AG04450	lung:	fetal
25	chrX:75249222-75249272	PANC-1	pancreas:	n/a
26	chrX:75249222-75249272	SKMC	muscle:	n/a
27	chrX:75249222-75249272	BE2_C	brain:	n/a
28	chrX:75249222-75249272	H1-hESC	embryonic stem cell:	embryo
29	chrX:75249222-75249272	GM06990	blood:	n/a
30	chrX:75249222-75249272	ECC-1	luminal epithelium:	n/a
31	chrX:75249222-75249272	ovcar-3	ovarian:	n/a
32	chrX:75249222-75249272	Caco-2	colon:	n/a
33	chrX:75249222-75249272	NHBE	bronchial:	n/a
34	chrX:75249222-75249272	HepG2	liver:	n/a
35	chrX:75249222-75249272	HAEpiC	amniotic membrane:	n/a
36	chrX:75249222-75249272	AoSMC	blood vessel:	n/a
37	chrX:75249222-75249272	HNPCEpiC	eye:	n/a
38	chrX:75249222-75249272	HCF	heart:	n/a
39	chrX:75249222-75249272	HRE	kidney:	n/a
40	chrX:75249222-75249272	HCT-116	colon:	n/a
41	chrX:75249222-75249272	HCM	heart:	n/a
42	chrX:75249222-75249272	BJ	skin:	n/a
43	chrX:75249222-75249272	SAEC	small airway:	n/a
44	chrX:75249222-75249272	HRCEpiC	kidney:	n/a
45	chrX:75249222-75249272	PFSK-1	brain:	n/a
46	chrX:75249222-75249272	LNCaP	prostate:	n/a
47	chrX:75249222-75249272	HL-60	blood:	n/a
48	chrX:75249222-75249272	HCPEpiC	choroid plexus:	n/a
49	chrX:75249222-75249272	SK-N-SH_RA	brain:	n/a
50	chrX:75249222-75249272	NB4	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000232332	TF binding region
ENSG00000232332	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16992144	0.87[CEU][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs2301862	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs2367715	0.81[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap]
rs5938404	0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs5938406	0.87[CEU][hapmap]
rs5938407	0.81[CEU][hapmap]
rs5981411	0.80[CEU][hapmap]
rs6647953	0.87[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links