Variant report

Variant	rs5938407
Chromosome Location	chrX:75391831-75391832
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12156973	0.81[CEU][hapmap]
rs12164341	0.91[JPT][hapmap]
rs16992144	0.94[CEU][hapmap]
rs2301862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2301863	0.90[JPT][hapmap]
rs2367715	0.87[CEU][hapmap]
rs4892428	0.94[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs5938404	0.94[CEU][hapmap]
rs5938406	0.89[CEU][hapmap]
rs5938419	0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs5981411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6647953	0.94[CEU][hapmap]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75388400-75392000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chrX:75388400-75392000	Weak transcription	HUVEC	blood vessel
3	chrX:75388400-75392000	Weak transcription	NHEK	skin
4	chrX:75389400-75392200	Weak transcription	Fetal Intestine Small	intestine
5	chrX:75390400-75392000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chrX:75391000-75392000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chrX:75391000-75392200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chrX:75391000-75392200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chrX:75391000-75392200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chrX:75391400-75392000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chrX:75391400-75392000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chrX:75391400-75392000	Enhancers	Dnd41	blood
13	chrX:75391400-75392200	Enhancers	Primary T cells from cord blood	blood
14	chrX:75391400-75392200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chrX:75391400-75392200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chrX:75391400-75392200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chrX:75391600-75392000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chrX:75391600-75392000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chrX:75391600-75392200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chrX:75391600-75393400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chrX:75391600-75394400	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chrX:75391800-75392000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chrX:75391800-75392200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chrX:75391800-75392200	Enhancers	Fetal Heart	heart
25	chrX:75391800-75392400	Enhancers	Primary B cells from peripheral blood	blood
26	chrX:75391800-75394000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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