Variant report

Variant	rs2301862
Chromosome Location	chrX:75395187-75395188
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:75393051..75395719-chrX:75400387..75402118,2	K562	blood:
2	chrX:75394219..75396336-chrX:75400387..75401890,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12156973	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs12164341	0.91[JPT][hapmap]
rs16992144	0.94[CEU][hapmap];0.91[TSI][hapmap]
rs2301863	0.90[JPT][hapmap]
rs2367715	0.87[CEU][hapmap];0.92[TSI][hapmap]
rs4892428	0.90[ASW][hapmap];0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs5938404	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs5938406	0.94[CEU][hapmap]
rs5938407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5938419	0.87[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs5938489	0.85[CEU][hapmap]
rs5981411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6647953	0.94[CEU][hapmap];0.88[TSI][hapmap]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75392000-75395800	Active TSS	GM12878-XiMat	blood
2	chrX:75392200-75395200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:75392400-75395200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrX:75392400-75395200	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chrX:75392600-75395200	Active TSS	NH-A	brain
6	chrX:75393800-75395600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chrX:75393800-75399200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chrX:75393800-75402000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chrX:75393800-75402200	Weak transcription	Placenta	Placenta
10	chrX:75393800-75406000	Weak transcription	Small Intestine	intestine
11	chrX:75393800-75406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:75394000-75395200	Genic enhancers	Primary monocytes fromperipheralblood	blood
13	chrX:75394000-75395200	Enhancers	Primary B cells from peripheral blood	blood
14	chrX:75394000-75395200	Enhancers	Spleen	Spleen
15	chrX:75394000-75395400	Enhancers	Primary B cells from cord blood	blood
16	chrX:75394000-75395400	Transcr. at gene 5' and 3'	Dnd41	blood
17	chrX:75394000-75396200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chrX:75394000-75398600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chrX:75394000-75402200	Weak transcription	Stomach Mucosa	stomach
20	chrX:75394200-75395200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
21	chrX:75394200-75395200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chrX:75394200-75395200	Enhancers	Adipose Nuclei	Adipose
23	chrX:75394200-75395200	Enhancers	Brain Cingulate Gyrus	brain
24	chrX:75394200-75395200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chrX:75394200-75395200	Active TSS	Stomach Smooth Muscle	stomach
26	chrX:75394200-75395400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chrX:75394200-75395400	Enhancers	Colon Smooth Muscle	Colon
28	chrX:75394200-75395800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chrX:75394200-75395800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chrX:75394200-75396000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chrX:75394200-75396000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chrX:75394200-75396000	Enhancers	Primary T cells from cord blood	blood
33	chrX:75394200-75396000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chrX:75394200-75396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chrX:75394200-75396600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chrX:75394200-75396600	Weak transcription	Left Ventricle	heart
37	chrX:75394200-75398600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chrX:75394200-75402000	Weak transcription	Lung	lung
39	chrX:75394200-75402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chrX:75394200-75402400	Weak transcription	Gastric	stomach
41	chrX:75394200-75405000	Weak transcription	Aorta	Aorta
42	chrX:75394200-75405000	Weak transcription	Brain Substantia Nigra	brain
43	chrX:75394200-75405800	Weak transcription	Colonic Mucosa	Colon
44	chrX:75394200-75406400	Weak transcription	Pancreas	Pancrea
45	chrX:75394200-75406600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chrX:75394200-75407400	Weak transcription	Esophagus	oesophagus
47	chrX:75394400-75395200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chrX:75394400-75395400	Enhancers	HUVEC	blood vessel
49	chrX:75394400-75395400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
50	chrX:75394400-75395800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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