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Variant report
Variant
rs5938489
Chromosome Location
chrX:75555352-75555353
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 10 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:9)
rs_ID
r
2
[population]
rs16992144
0.92[CEU][hapmap]
rs2207739
0.92[CEU][hapmap]
rs2301862
0.85[CEU][hapmap]
rs2367715
0.92[CEU][hapmap]
rs4892428
0.92[CEU][hapmap]
rs5938404
0.92[CEU][hapmap]
rs5938406
0.93[CEU][hapmap]
rs5981411
0.86[CEU][hapmap]
rs6647953
0.92[CEU][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv2830377
chrX:75525310-76337197
Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA
9 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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