Variant report

Variant	rs59439677
Chromosome Location	chr15:79293291-79293292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79220482..79222111-chr15:79292818..79294616,2	MCF-7	breast:
2	chr15:79286840..79288798-chr15:79290749..79294640,3	MCF-7	breast:
3	chr15:79237353..79240243-chr15:79292172..79293938,2	K562	blood:

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12438399	1.00[AMR][1000 genomes]
rs57004337	1.00[AMR][1000 genomes]
rs59014632	1.00[AMR][1000 genomes]
rs73465321	1.00[AMR][1000 genomes]
rs73465325	1.00[AMR][1000 genomes]
rs73472358	1.00[AMR][1000 genomes]
rs73472359	1.00[AMR][1000 genomes]
rs73472365	1.00[AMR][1000 genomes]
rs73477324	1.00[AMR][1000 genomes]
rs74024494	1.00[AMR][1000 genomes]
rs74024495	1.00[AMR][1000 genomes]
rs9806439	1.00[AMR][1000 genomes]
rs9806650	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1000067	chr15:79291602-79300177	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79276400-79309200	Weak transcription	Right Atrium	heart
2	chr15:79281800-79296000	Weak transcription	Primary B cells from cord blood	blood
3	chr15:79281800-79296600	Weak transcription	Esophagus	oesophagus
4	chr15:79281800-79296600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:79283000-79295000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:79285600-79294400	Weak transcription	HSMM	muscle
7	chr15:79285800-79294600	Weak transcription	Brain Angular Gyrus	brain
8	chr15:79285800-79298400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:79287200-79325800	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:79288000-79293600	Strong transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:79288400-79295400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:79289000-79296600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:79289400-79297000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:79289600-79295000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:79289600-79295000	Weak transcription	HMEC	breast
16	chr15:79289600-79295200	Weak transcription	NH-A	brain
17	chr15:79290400-79293400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:79290400-79295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:79290800-79294400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:79290800-79294800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:79290800-79334800	Weak transcription	Brain Substantia Nigra	brain
22	chr15:79291000-79293600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:79291000-79294600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr15:79291000-79296200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:79291200-79294600	Weak transcription	HSMMtube	muscle
26	chr15:79291200-79295000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:79291200-79295800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:79291400-79294800	Weak transcription	Spleen	Spleen
29	chr15:79291400-79295200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:79291400-79296600	Weak transcription	Lung	lung
31	chr15:79291600-79293800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:79291600-79295200	Weak transcription	GM12878-XiMat	blood
33	chr15:79291600-79296000	Weak transcription	HepG2	liver
34	chr15:79291800-79293400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:79292000-79293600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr15:79292200-79295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:79292400-79293400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:79292600-79293600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr15:79292600-79295400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:79292600-79296600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:79292800-79294800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:79292800-79301000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:79293000-79293600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:79293200-79293600	Enhancers	HUES48 Cell Line	embryonic stem cell

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