Variant report

Variant	rs9806650
Chromosome Location	chr15:79229409-79229410
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr15:79229270-79229986	K562	blood:	n/a	n/a
2	MAX	chr15:79229385-79230182	K562	blood:	n/a	n/a
3	ZMIZ1	chr15:79229357-79229980	K562	blood:	n/a	n/a
4	POLR2A	chr15:79229349-79229998	K562	blood:	n/a	n/a
5	ATF1	chr15:79229399-79229866	K562	blood:	n/a	n/a
6	TEAD4	chr15:79229355-79230133	K562	blood:	n/a	n/a
7	EGR1	chr15:79229379-79229876	K562	blood:	n/a	n/a
8	CBX3	chr15:79229333-79229967	K562	blood:	n/a	n/a
9	POLR2A	chr15:79229315-79230195	GM12878	blood:	n/a	n/a
10	MAZ	chr15:79229390-79229967	K562	blood:	n/a	n/a
11	EP300	chr15:79229381-79230066	K562	blood:	n/a	n/a
12	EGR1	chr15:79229379-79229920	K562	blood:	n/a	n/a
13	POLR2A	chr15:79229327-79229927	K562	blood:	n/a	n/a
14	CCNT2	chr15:79229409-79229798	K562	blood:	n/a	n/a
15	POLR2A	chr15:79229304-79229870	K562	blood:	n/a	n/a
16	TBP	chr15:79229400-79230047	K562	blood:	n/a	n/a
17	HEY1	chr15:79229338-79229898	K562	blood:	n/a	n/a
18	TAF1	chr15:79229351-79229942	K562	blood:	n/a	n/a
19	JUND	chr15:79229382-79230003	K562	blood:	n/a	n/a
20	POLR2A	chr15:79229239-79229992	K562	blood:	n/a	n/a
21	GTF2B	chr15:79229390-79229826	K562	blood:	n/a	n/a
22	POLR2A	chr15:79229313-79230153	K562	blood:	n/a	n/a
23	REST	chr15:79229375-79229953	K562	blood:	n/a	n/a
24	ELF1	chr15:79229402-79229901	K562	blood:	n/a	n/a
25	RCOR1	chr15:79229386-79230113	K562	blood:	n/a	n/a
26	STAT5A	chr15:79229396-79229908	K562	blood:	n/a	chr15:79229628-79229637 chr15:79229629-79229638
27	POLR2A	chr15:79229178-79229871	K562	blood:	n/a	n/a
28	PML	chr15:79229250-79229989	K562	blood:	n/a	n/a
29	POLR2A	chr15:79229300-79230248	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:79222672..79226174-chr15:79226685..79229932,5	K562	blood:
2	chr15:79224120..79226402-chr15:79226596..79229872,4	MCF-7	breast:
3	chr15:79228950..79233188-chr15:79235013..79237607,6	K562	blood:
4	chr15:79228914..79232769-chr15:79235901..79239047,4	MCF-7	breast:

No data

Variant related genes	Relation type
CTSH	TF binding region
ENSG00000103811	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57004337	1.00[AMR][1000 genomes]
rs59014632	1.00[AMR][1000 genomes]
rs59439677	1.00[AMR][1000 genomes]
rs73465321	1.00[AMR][1000 genomes]
rs73465325	1.00[AMR][1000 genomes]
rs73472358	1.00[AMR][1000 genomes]
rs73472359	1.00[AMR][1000 genomes]
rs73472365	1.00[AMR][1000 genomes]
rs73477324	1.00[AMR][1000 genomes]
rs74024494	1.00[AMR][1000 genomes]
rs74024495	1.00[AMR][1000 genomes]
rs9806439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79203600-79231000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:79210400-79230200	Strong transcription	Fetal Intestine Large	intestine
3	chr15:79215400-79233200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:79215400-79236600	Weak transcription	Small Intestine	intestine
5	chr15:79215600-79232800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:79215800-79229600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:79219400-79229600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:79219600-79236200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:79220200-79229600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:79220200-79229600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:79220200-79230600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:79220200-79231800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:79220200-79235200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:79220600-79236200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:79220600-79236400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:79222000-79232000	Strong transcription	HepG2	liver
17	chr15:79222200-79233400	Weak transcription	Thymus	Thymus
18	chr15:79222400-79236400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:79223800-79236000	Weak transcription	HSMMtube	muscle
20	chr15:79223800-79236200	Weak transcription	Brain Angular Gyrus	brain
21	chr15:79224000-79229600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:79224200-79230200	Strong transcription	Pancreas	Pancrea
23	chr15:79224200-79236400	Weak transcription	Colonic Mucosa	Colon
24	chr15:79224400-79231000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:79224400-79236600	Weak transcription	HMEC	breast
26	chr15:79224600-79236200	Weak transcription	Psoas Muscle	Psoas
27	chr15:79225600-79236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:79226400-79236000	Weak transcription	Fetal Kidney	kidney
29	chr15:79226600-79236200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:79227000-79229600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:79227000-79229600	Weak transcription	Right Atrium	heart
32	chr15:79227000-79236000	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:79227200-79230000	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr15:79227200-79230200	Strong transcription	Fetal Intestine Small	intestine
35	chr15:79227200-79231800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:79227200-79236000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:79227200-79236200	Weak transcription	Placenta	Placenta
38	chr15:79227400-79230400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr15:79227400-79231000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:79227400-79234800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr15:79227400-79236400	Weak transcription	Aorta	Aorta
42	chr15:79227400-79236600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:79227600-79236200	Weak transcription	Right Ventricle	heart
44	chr15:79228000-79229800	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:79228000-79231800	Weak transcription	Left Ventricle	heart
46	chr15:79228000-79236000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:79228200-79235400	Weak transcription	Brain Anterior Caudate	brain
48	chr15:79228400-79229600	Enhancers	Fetal Muscle Trunk	muscle
49	chr15:79228400-79230200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:79228400-79230200	Strong transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links