Variant report

Variant	rs73477324
Chromosome Location	chr15:79346832-79346833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12438399	1.00[AMR][1000 genomes]
rs57004337	1.00[AMR][1000 genomes]
rs59014632	1.00[AMR][1000 genomes]
rs59439677	1.00[AMR][1000 genomes]
rs73465321	1.00[AMR][1000 genomes]
rs73465325	1.00[AMR][1000 genomes]
rs73472358	1.00[AMR][1000 genomes]
rs73472359	1.00[AMR][1000 genomes]
rs73472365	1.00[AMR][1000 genomes]
rs74024494	1.00[AMR][1000 genomes]
rs74024495	1.00[AMR][1000 genomes]
rs9806439	1.00[AMR][1000 genomes]
rs9806650	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525630	chr15:79344324-79359310	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv457210	chr15:79344416-79394577	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv570204	chr15:79344416-79394577	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79342200-79348400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:79342200-79349400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:79343000-79347200	Enhancers	Brain Substantia Nigra	brain
4	chr15:79344800-79356600	Weak transcription	Brain Anterior Caudate	brain
5	chr15:79345000-79348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:79345200-79350200	Weak transcription	Right Atrium	heart
7	chr15:79346400-79347400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:79346400-79349800	Strong transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:79346600-79347400	Genic enhancers	Brain Cingulate Gyrus	brain
10	chr15:79346600-79349800	Strong transcription	Brain Angular Gyrus	brain
11	chr15:79346600-79355600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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