Variant report

Variant	rs74024495
Chromosome Location	chr15:79262157-79262158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79246589..79249158-chr15:79260157..79262768,3	MCF-7	breast:
2	chr15:79258673..79264077-chr15:79264289..79268507,6	K562	blood:
3	chr15:79259906..79262611-chr15:79264288..79265789,2	K562	blood:
4	chr15:79255321..79258216-chr15:79260787..79263775,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57004337	1.00[AMR][1000 genomes]
rs59014632	1.00[AMR][1000 genomes]
rs59439677	1.00[AMR][1000 genomes]
rs73465321	1.00[AMR][1000 genomes]
rs73465325	1.00[AMR][1000 genomes]
rs73472358	1.00[AMR][1000 genomes]
rs73472359	1.00[AMR][1000 genomes]
rs73472365	1.00[AMR][1000 genomes]
rs73477324	1.00[AMR][1000 genomes]
rs74024494	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806439	1.00[AMR][1000 genomes]
rs9806650	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79263400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:79250800-79263400	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:79253000-79265400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:79253800-79263400	Weak transcription	Brain Angular Gyrus	brain
6	chr15:79254200-79263400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:79260400-79264000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:79260400-79264400	Enhancers	HepG2	liver
9	chr15:79260600-79263600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr15:79260600-79263600	Enhancers	Stomach Mucosa	stomach
11	chr15:79260600-79264200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:79260600-79264400	Enhancers	Placenta	Placenta
13	chr15:79260800-79262800	Weak transcription	Lung	lung
14	chr15:79261000-79262400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:79261000-79262600	Enhancers	Duodenum Mucosa	Duodenum
16	chr15:79261000-79263600	Enhancers	Fetal Intestine Large	intestine
17	chr15:79261000-79263600	Enhancers	Fetal Intestine Small	intestine
18	chr15:79261200-79262200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:79261200-79262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:79261200-79280400	Weak transcription	Esophagus	oesophagus
21	chr15:79261400-79263800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:79261600-79263400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:79261600-79264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:79261800-79262200	Weak transcription	Pancreas	Pancrea
25	chr15:79261800-79263200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:79262000-79262200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:79262000-79263400	Enhancers	Liver	Liver

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