Variant report

Variant	rs59451720
Chromosome Location	chr15:59815645-59815646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59646346	0.97[AFR][1000 genomes]
rs60059069	0.91[AFR][1000 genomes]
rs60897206	1.00[AFR][1000 genomes]
rs61214052	1.00[AFR][1000 genomes]
rs7176102	0.94[AFR][1000 genomes]
rs73417092	0.94[AFR][1000 genomes]
rs73417097	0.94[AFR][1000 genomes]
rs73417099	0.94[AFR][1000 genomes]
rs73417102	0.88[AFR][1000 genomes]
rs73418910	0.94[AFR][1000 genomes]
rs73418923	0.97[AFR][1000 genomes]
rs73418925	0.91[AFR][1000 genomes]
rs73418937	0.94[AFR][1000 genomes]
rs73418943	0.94[AFR][1000 genomes]
rs8027847	0.94[AFR][1000 genomes]
rs8029023	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59807000-59818000	Enhancers	Primary B cells from peripheral blood	blood
2	chr15:59807200-59816600	Enhancers	Primary B cells from cord blood	blood
3	chr15:59808000-59817600	Weak transcription	Fetal Brain Female	brain
4	chr15:59812600-59818000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:59814400-59816400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:59814400-59817400	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:59814400-59817800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr15:59814600-59816600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:59814600-59817200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr15:59814600-59817200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr15:59814800-59816600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:59814800-59817000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:59814800-59817200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:59815000-59815800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:59815000-59816800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:59815000-59817000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:59815200-59815800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:59815200-59817000	Bivalent Enhancer	Fetal Thymus	thymus
19	chr15:59815200-59817200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr15:59815200-59817600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr15:59815400-59816000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:59815400-59816600	Enhancers	Spleen	Spleen
23	chr15:59815400-59817000	Enhancers	GM12878-XiMat	blood
24	chr15:59815400-59817600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:59815400-59817800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr15:59815600-59815800	Bivalent Enhancer	Dnd41	blood
27	chr15:59815600-59816000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr15:59815600-59816200	Enhancers	Primary T cells from cord blood	blood
29	chr15:59815600-59816200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr15:59815600-59816400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:59815600-59817000	Weak transcription	Esophagus	oesophagus

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