Variant report
Variant | rs7176102 |
---|---|
Chromosome Location | chr15:59798630-59798631 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs59451720 | 0.94[AFR][1000 genomes] |
rs59646346 | 0.91[AFR][1000 genomes] |
rs60059069 | 0.85[AFR][1000 genomes] |
rs60897206 | 0.94[AFR][1000 genomes] |
rs61214052 | 0.94[AFR][1000 genomes] |
rs73417092 | 0.88[AFR][1000 genomes] |
rs73417097 | 0.88[AFR][1000 genomes] |
rs73417099 | 0.88[AFR][1000 genomes] |
rs73417102 | 0.83[AFR][1000 genomes] |
rs73418910 | 0.88[AFR][1000 genomes] |
rs73418923 | 0.91[AFR][1000 genomes] |
rs73418925 | 0.85[AFR][1000 genomes] |
rs73418937 | 0.88[AFR][1000 genomes] |
rs73418943 | 0.88[AFR][1000 genomes] |
rs8027847 | 1.00[MKK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes] |
rs8029023 | 1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv527307 | chr15:59103328-60018487 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 145 gene(s) | inside rSNPs | diseases |
2 | nsv1044442 | chr15:59765724-59955587 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
3 | nsv542403 | chr15:59765724-59955587 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
4 | nsv904279 | chr15:59791666-59842927 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:59798600-59800600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |