Variant report

Variant	rs59646346
Chromosome Location	chr15:59819734-59819735
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59451720	0.97[AFR][1000 genomes]
rs60059069	0.94[AFR][1000 genomes]
rs60897206	0.97[AFR][1000 genomes]
rs61214052	0.97[AFR][1000 genomes]
rs7176102	0.91[AFR][1000 genomes]
rs73417092	0.91[AFR][1000 genomes]
rs73417097	0.91[AFR][1000 genomes]
rs73417099	0.91[AFR][1000 genomes]
rs73417102	0.86[AFR][1000 genomes]
rs73418910	0.91[AFR][1000 genomes]
rs73418923	1.00[AFR][1000 genomes]
rs73418925	0.94[AFR][1000 genomes]
rs73418937	0.97[AFR][1000 genomes]
rs73418943	0.97[AFR][1000 genomes]
rs8027847	0.91[AFR][1000 genomes]
rs8029023	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv984079	chr15:59816507-59823194	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59817000-59824600	Weak transcription	GM12878-XiMat	blood
2	chr15:59817200-59820200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:59817600-59820600	Weak transcription	Primary B cells from cord blood	blood
4	chr15:59818000-59820800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr15:59818000-59820800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:59818000-59821000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr15:59818000-59821000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:59818000-59821000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:59818000-59823200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:59819600-59820200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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