Variant report

Variant	rs73417099
Chromosome Location	chr15:59807549-59807550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59451720	0.94[AFR][1000 genomes]
rs59646346	0.91[AFR][1000 genomes]
rs60059069	0.85[AFR][1000 genomes]
rs60897206	0.94[AFR][1000 genomes]
rs61214052	0.94[AFR][1000 genomes]
rs7176102	0.88[AFR][1000 genomes]
rs73417092	1.00[AFR][1000 genomes]
rs73417097	1.00[AFR][1000 genomes]
rs73417102	0.94[AFR][1000 genomes]
rs73418910	1.00[AFR][1000 genomes]
rs73418923	0.91[AFR][1000 genomes]
rs73418925	0.97[AFR][1000 genomes]
rs73418937	0.88[AFR][1000 genomes]
rs73418943	0.88[AFR][1000 genomes]
rs8027847	1.00[AFR][1000 genomes]
rs8029023	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59800200-59807600	Weak transcription	Pancreas	Pancrea
2	chr15:59807000-59808600	Enhancers	GM12878-XiMat	blood
3	chr15:59807000-59818000	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:59807200-59816600	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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