Variant report

Variant	rs594579
Chromosome Location	chr15:45951710-45951711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45932766..45934482-chr15:45951327..45953164,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11637483	1.00[CHB][hapmap]
rs16946633	1.00[CHB][hapmap]
rs16946942	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
3	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv977055	chr15:45949717-45957214	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
2	chr15:45938600-45952600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:45938800-45954200	Weak transcription	Aorta	Aorta
4	chr15:45941600-45951800	Weak transcription	Thymus	Thymus
5	chr15:45941600-45952400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:45941600-45952600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:45941600-45954000	Weak transcription	Hela-S3	cervix
8	chr15:45941600-45966800	Weak transcription	NHLF	lung
9	chr15:45942800-45951800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:45942800-45952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:45943800-45956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:45945800-45953600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:45946200-45952000	Weak transcription	Left Ventricle	heart
14	chr15:45946200-45952000	Weak transcription	Right Atrium	heart
15	chr15:45946200-45952200	Weak transcription	NHDF-Ad	bronchial
16	chr15:45946200-45953400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:45946200-45953600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:45946200-45953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:45946200-45954600	Weak transcription	Right Ventricle	heart
20	chr15:45946600-45953800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:45946800-45954000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:45947000-45954000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:45947600-45962200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:45947600-45968200	Weak transcription	Placenta	Placenta
25	chr15:45948200-45953200	Weak transcription	GM12878-XiMat	blood
26	chr15:45949600-45953000	Enhancers	Small Intestine	intestine
27	chr15:45949600-45976800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:45949800-45953000	Weak transcription	HepG2	liver
29	chr15:45950200-45952400	Weak transcription	Stomach Mucosa	stomach
30	chr15:45950400-45952000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:45950400-45953200	Enhancers	Brain Hippocampus Middle	brain
32	chr15:45950400-45969600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:45950600-45952000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:45950600-45952000	Strong transcription	HMEC	breast
35	chr15:45950600-45952200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:45950600-45958600	Strong transcription	Primary T cells from cord blood	blood
37	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr15:45950800-45951800	Weak transcription	Fetal Intestine Large	intestine
39	chr15:45950800-45953200	Enhancers	Brain Angular Gyrus	brain
40	chr15:45950800-45958600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:45950800-45958800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:45950800-45986000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr15:45951000-45951800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
44	chr15:45951000-45951800	Genic enhancers	Spleen	Spleen
45	chr15:45951000-45952000	Genic enhancers	Gastric	stomach
46	chr15:45951000-45952400	Enhancers	Colon Smooth Muscle	Colon
47	chr15:45951000-45952600	Genic enhancers	Colonic Mucosa	Colon
48	chr15:45951000-45953000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:45951000-45953200	Enhancers	Brain Substantia Nigra	brain
50	chr15:45951000-45953200	Enhancers	Psoas Muscle	Psoas

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