Variant report

Variant	rs11637483
Chromosome Location	chr15:45960897-45960898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45945911..45948903-chr15:45960461..45962658,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11638737	0.82[EUR][1000 genomes]
rs16946633	1.00[CHB][hapmap]
rs16946942	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs28876107	1.00[EUR][1000 genomes]
rs594579	1.00[CHB][hapmap]
rs60336912	0.82[EUR][1000 genomes]
rs73424268	0.82[EUR][1000 genomes]
rs73424278	0.82[EUR][1000 genomes]
rs73424282	0.82[EUR][1000 genomes]
rs9989346	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
3	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
2	chr15:45941600-45966800	Weak transcription	NHLF	lung
3	chr15:45947600-45962200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:45947600-45968200	Weak transcription	Placenta	Placenta
5	chr15:45949600-45976800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:45950400-45969600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:45950800-45986000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr15:45952800-45968400	Weak transcription	Brain Anterior Caudate	brain
10	chr15:45952800-45970200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:45953000-45968200	Weak transcription	A549	lung
12	chr15:45953000-45984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:45953200-45977600	Weak transcription	Stomach Mucosa	stomach
14	chr15:45953400-45974600	Weak transcription	HepG2	liver
15	chr15:45953400-45986200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr15:45954000-45980000	Weak transcription	Fetal Thymus	thymus
17	chr15:45954400-45962400	Weak transcription	Hela-S3	cervix
18	chr15:45954600-45961800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:45954600-45964400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:45954600-45966800	Weak transcription	Small Intestine	intestine
21	chr15:45954800-45981600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:45955000-45961800	Weak transcription	GM12878-XiMat	blood
23	chr15:45955000-45964800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:45955200-45964800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:45955600-45961600	Weak transcription	Fetal Stomach	stomach
26	chr15:45956000-45970200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:45956200-45961400	Weak transcription	Fetal Intestine Large	intestine
28	chr15:45956600-45962000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:45957000-45961800	Weak transcription	Aorta	Aorta
30	chr15:45957000-45963600	Weak transcription	Spleen	Spleen
31	chr15:45957200-45961800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:45957400-45961800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:45957400-45961800	Weak transcription	Ovary	ovary
34	chr15:45957400-45962800	Weak transcription	Gastric	stomach
35	chr15:45957400-45963800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:45957400-45964400	Weak transcription	Thymus	Thymus
37	chr15:45957400-45967000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:45957400-45972200	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:45957400-45973400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:45957400-45981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:45957400-45985800	Weak transcription	HSMMtube	muscle
42	chr15:45957600-45961000	Weak transcription	NHDF-Ad	bronchial
43	chr15:45957600-45964400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:45957600-45965000	Weak transcription	Right Ventricle	heart
45	chr15:45957800-45970400	Weak transcription	Osteobl	bone
46	chr15:45958400-45961800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:45958400-45986400	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:45958600-45961400	Weak transcription	Pancreas	Pancrea
49	chr15:45958600-45961800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:45959600-45961200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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