Variant report

Variant	rs16946942
Chromosome Location	chr15:45970854-45970855
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11637483	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs11638737	0.80[EUR][1000 genomes]
rs16946633	1.00[CHB][hapmap]
rs28876107	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs594579	1.00[CHB][hapmap]
rs60336912	0.80[EUR][1000 genomes]
rs73424268	0.80[EUR][1000 genomes]
rs73424278	0.80[EUR][1000 genomes]
rs73424282	0.80[EUR][1000 genomes]
rs9989346	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45949600-45976800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:45950800-45986000	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr15:45953000-45984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:45953200-45977600	Weak transcription	Stomach Mucosa	stomach
6	chr15:45953400-45974600	Weak transcription	HepG2	liver
7	chr15:45953400-45986200	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr15:45954000-45980000	Weak transcription	Fetal Thymus	thymus
9	chr15:45954800-45981600	Weak transcription	Brain Substantia Nigra	brain
10	chr15:45957400-45972200	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:45957400-45973400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:45957400-45981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:45957400-45985800	Weak transcription	HSMMtube	muscle
14	chr15:45958400-45986400	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:45959600-45986200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:45960000-45986000	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:45960200-45971200	Strong transcription	Colonic Mucosa	Colon
18	chr15:45960200-45987800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:45960400-45985200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:45960400-45985800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:45960400-45986200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:45960400-45987000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:45960400-45988200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr15:45960600-45985800	Strong transcription	Primary T cells from cord blood	blood
25	chr15:45960600-45986000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr15:45960600-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:45960600-45986600	Strong transcription	Primary B cells from cord blood	blood
28	chr15:45960600-45987200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:45960800-45985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:45960800-45987000	Strong transcription	Liver	Liver
31	chr15:45961400-45972800	Strong transcription	Fetal Intestine Large	intestine
32	chr15:45961600-45971200	Strong transcription	Lung	lung
33	chr15:45961800-45987000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr15:45962800-45976200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:45963000-45971400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:45963000-45982200	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:45963200-45971000	Strong transcription	Adipose Nuclei	Adipose
38	chr15:45963200-45984400	Weak transcription	Fetal Kidney	kidney
39	chr15:45963600-45971000	Strong transcription	Spleen	Spleen
40	chr15:45964800-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:45965800-45971000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:45965800-45974200	Weak transcription	Psoas Muscle	Psoas
43	chr15:45966400-45979200	Weak transcription	Brain Angular Gyrus	brain
44	chr15:45966600-45981400	Weak transcription	HSMM	muscle
45	chr15:45968200-45972200	Strong transcription	HMEC	breast
46	chr15:45968800-45971600	Weak transcription	Fetal Intestine Small	intestine
47	chr15:45968800-45972600	Weak transcription	Aorta	Aorta
48	chr15:45968800-45974200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:45968800-45974600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:45968800-45974600	Weak transcription	Small Intestine	intestine

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