Variant report

Variant	rs60336912
Chromosome Location	chr15:45989568-45989569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11637483	0.82[EUR][1000 genomes]
rs11638737	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16946942	0.80[EUR][1000 genomes]
rs28876107	0.82[EUR][1000 genomes]
rs73424268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73424278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73424282	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9989346	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45968800-45989600	Weak transcription	Placenta	Placenta
2	chr15:45983200-45990800	Weak transcription	Small Intestine	intestine
3	chr15:45983200-45991800	Weak transcription	A549	lung
4	chr15:45983200-45996000	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:45983400-45996800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:45983600-45996400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:45983800-45994600	Weak transcription	Ovary	ovary
8	chr15:45983800-45996200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:45984000-45990200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:45984000-45994400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:45984200-45991000	Weak transcription	Left Ventricle	heart
12	chr15:45984200-45994200	Weak transcription	NHEK	skin
13	chr15:45984200-45995400	Weak transcription	Psoas Muscle	Psoas
14	chr15:45984200-45996200	Weak transcription	Fetal Stomach	stomach
15	chr15:45984200-45996200	Weak transcription	NHDF-Ad	bronchial
16	chr15:45984400-45996400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:45985200-45991400	Weak transcription	Fetal Intestine Large	intestine
18	chr15:45985200-45996200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:45985400-45996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:45985400-45996800	Weak transcription	HMEC	breast
21	chr15:45985600-45994400	Weak transcription	Pancreas	Pancrea
22	chr15:45985800-45994400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:45985800-45995800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:45985800-45995800	Weak transcription	GM12878-XiMat	blood
25	chr15:45985800-45996200	Weak transcription	Gastric	stomach
26	chr15:45985800-45996400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:45985800-45996400	Weak transcription	Adipose Nuclei	Adipose
28	chr15:45985800-45996400	Weak transcription	Right Ventricle	heart
29	chr15:45986000-45992800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:45986000-45993800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:45986000-45994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:45986000-45994400	Weak transcription	Esophagus	oesophagus
33	chr15:45986000-45994800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:45986000-45996200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:45986000-45996400	Weak transcription	Aorta	Aorta
36	chr15:45986000-45996400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:45986000-45996400	Weak transcription	Spleen	Spleen
38	chr15:45986000-45996600	Weak transcription	Colonic Mucosa	Colon
39	chr15:45986200-45996400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:45986200-45996400	Weak transcription	Lung	lung
41	chr15:45986200-45996400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr15:45986400-45991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:45986400-45994600	Weak transcription	Fetal Intestine Small	intestine
44	chr15:45986400-45996200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:45986600-45992200	Weak transcription	Primary B cells from cord blood	blood
46	chr15:45986800-45996000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:45987000-45994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:45987000-45996400	Weak transcription	Liver	Liver
49	chr15:45987000-45996400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:45987200-45993800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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