Variant report

Variant	rs59536488
Chromosome Location	chr6:54882051-54882052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16886099	1.00[EUR][1000 genomes]
rs3105260	1.00[EUR][1000 genomes]
rs57915824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58658626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59630560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923998	1.00[EUR][1000 genomes]
rs73434487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73438561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7356813	1.00[EUR][1000 genomes]
rs7740224	1.00[EUR][1000 genomes]
rs7762218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475055	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54879800-54882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:54880400-54883200	Enhancers	Fetal Intestine Large	intestine
3	chr6:54880400-54883200	Enhancers	Fetal Lung	lung
4	chr6:54880800-54883400	Enhancers	Fetal Intestine Small	intestine
5	chr6:54881600-54882400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:54881600-54882600	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:54881600-54883000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:54882000-54882200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:54882000-54883000	Weak transcription	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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