Variant report
| Variant | rs6923998 |
|---|---|
| Chromosome Location | chr6:54825709-54825710 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261235 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs16886099 | 1.00[EUR][1000 genomes] |
| rs3105260 | 1.00[EUR][1000 genomes] |
| rs57915824 | 1.00[EUR][1000 genomes] |
| rs58658626 | 1.00[EUR][1000 genomes] |
| rs59536488 | 1.00[EUR][1000 genomes] |
| rs59630560 | 1.00[EUR][1000 genomes] |
| rs73434487 | 1.00[EUR][1000 genomes] |
| rs73438551 | 1.00[EUR][1000 genomes] |
| rs73438552 | 1.00[EUR][1000 genomes] |
| rs73438561 | 1.00[EUR][1000 genomes] |
| rs7356813 | 1.00[EUR][1000 genomes] |
| rs7740224 | 1.00[EUR][1000 genomes] |
| rs7762218 | 1.00[EUR][1000 genomes] |
| rs7766442 | 1.00[EUR][1000 genomes] |
| rs9475055 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
