Variant report

Variant	rs59544318
Chromosome Location	chr3:22928905-22928906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55869734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56863127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59131780	1.00[AMR][1000 genomes]
rs73820485	1.00[AMR][1000 genomes]
rs73820487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73821387	1.00[AMR][1000 genomes]
rs73821389	1.00[AMR][1000 genomes]
rs73822909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822910	1.00[AMR][1000 genomes]
rs73822916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822917	1.00[AMR][1000 genomes]
rs7621045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22927800-22929200	Enhancers	Fetal Brain Male	brain
2	chr3:22928200-22929200	Weak transcription	Fetal Lung	lung
3	chr3:22928400-22935000	Weak transcription	Ovary	ovary
4	chr3:22928800-22933600	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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