Variant report

Variant	rs73821387
Chromosome Location	chr3:23003576-23003577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55869734	1.00[AMR][1000 genomes]
rs56863127	1.00[AMR][1000 genomes]
rs59131780	1.00[AMR][1000 genomes]
rs59544318	1.00[AMR][1000 genomes]
rs73820485	1.00[AMR][1000 genomes]
rs73820487	1.00[AMR][1000 genomes]
rs73820489	1.00[AMR][1000 genomes]
rs73821388	0.96[AFR][1000 genomes]
rs73821389	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822909	1.00[AMR][1000 genomes]
rs73822910	1.00[AMR][1000 genomes]
rs73822916	1.00[AMR][1000 genomes]
rs73822917	1.00[AMR][1000 genomes]
rs7621045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23002000-23003600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links