Variant report

Variant	rs7621045
Chromosome Location	chr3:23001244-23001245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55869734	1.00[AMR][1000 genomes]
rs56863127	1.00[AMR][1000 genomes]
rs59131780	1.00[AMR][1000 genomes]
rs59544318	1.00[AMR][1000 genomes]
rs73820485	1.00[AMR][1000 genomes]
rs73820487	1.00[AMR][1000 genomes]
rs73820489	1.00[AMR][1000 genomes]
rs73821387	1.00[AMR][1000 genomes]
rs73821389	1.00[AMR][1000 genomes]
rs73822909	1.00[AMR][1000 genomes]
rs73822910	1.00[AMR][1000 genomes]
rs73822916	1.00[AMR][1000 genomes]
rs73822917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23000400-23002000	Enhancers	GM12878-XiMat	blood
2	chr3:23000400-23002000	Enhancers	HUVEC	blood vessel
3	chr3:23000800-23002000	Enhancers	Fetal Lung	lung
4	chr3:23001200-23001400	Enhancers	Aorta	Aorta
5	chr3:23001200-23001600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:23001200-23001600	Enhancers	Fetal Muscle Leg	muscle
7	chr3:23001200-23001800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:23001200-23002000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:23001200-23002000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:23001200-23002000	Enhancers	Brain Germinal Matrix	brain
11	chr3:23001200-23002000	Enhancers	Fetal Stomach	stomach
12	chr3:23001200-23002000	Enhancers	Ovary	ovary
13	chr3:23001200-23002000	Enhancers	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links