Variant report

Variant	rs73820487
Chromosome Location	chr3:22964326-22964327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55869734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56863127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59131780	1.00[AMR][1000 genomes]
rs59544318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820485	1.00[AMR][1000 genomes]
rs73820489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73821387	1.00[AMR][1000 genomes]
rs73821389	1.00[AMR][1000 genomes]
rs73822909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822910	1.00[AMR][1000 genomes]
rs73822916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822917	1.00[AMR][1000 genomes]
rs7621045	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2611846	chr3:22963119-22964610	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22959600-22969800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:22964000-22964400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:22964200-22965800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:22964200-22966000	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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