Variant report

Variant	rs59555466
Chromosome Location	chr7:41026640-41026641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12701848	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701849	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701850	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12701851	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13222733	0.82[ASN][1000 genomes]
rs13223604	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13235016	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13247967	0.96[ASN][1000 genomes]
rs17622437	0.84[ASN][1000 genomes]
rs17715157	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17771915	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1859699	0.84[ASN][1000 genomes]
rs2108183	0.83[ASN][1000 genomes]
rs2190342	0.84[ASN][1000 genomes]
rs2190348	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34951430	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35273726	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35274819	0.86[ASN][1000 genomes]
rs4329187	0.80[ASN][1000 genomes]
rs4454200	0.83[ASN][1000 genomes]
rs6942431	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6946439	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6959994	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6960159	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6967269	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6974297	0.91[ASN][1000 genomes]
rs757913	0.84[ASN][1000 genomes]
rs7776627	0.83[ASN][1000 genomes]
rs7783070	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7792912	0.84[ASN][1000 genomes]
rs9769724	0.84[ASN][1000 genomes]
rs979863	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41011800-41042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41019200-41036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:41020800-41034200	Weak transcription	Aorta	Aorta
4	chr7:41024200-41028200	Enhancers	Hela-S3	cervix
5	chr7:41024400-41027400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr7:41024800-41026800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:41024800-41027000	Enhancers	Osteobl	bone
8	chr7:41025000-41026800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:41025000-41026800	Enhancers	NHLF	lung
10	chr7:41025000-41027000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:41025400-41027000	Enhancers	NHDF-Ad	bronchial
12	chr7:41026400-41026800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:41026400-41027600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:41026600-41029800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:41026600-41030000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links