Variant report

Variant	rs13247967
Chromosome Location	chr7:41036974-41036975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11771067	0.81[EUR][1000 genomes]
rs12113729	0.80[EUR][1000 genomes]
rs12701848	0.91[ASN][1000 genomes]
rs12701849	0.91[ASN][1000 genomes]
rs12701850	0.91[ASN][1000 genomes]
rs12701851	0.91[ASN][1000 genomes]
rs12701858	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13222733	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13223604	0.91[ASN][1000 genomes]
rs13235016	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13239481	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17622437	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17715157	0.91[ASN][1000 genomes]
rs17771915	0.91[ASN][1000 genomes]
rs1859699	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1990137	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1990138	0.86[EUR][1000 genomes]
rs2108183	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2190342	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2190348	0.91[ASN][1000 genomes]
rs34951430	0.91[ASN][1000 genomes]
rs35273726	0.91[ASN][1000 genomes]
rs35274819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4329187	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4454200	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59555466	0.96[ASN][1000 genomes]
rs6942431	0.90[ASN][1000 genomes]
rs6946439	0.91[ASN][1000 genomes]
rs6959994	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6960159	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6967269	0.91[ASN][1000 genomes]
rs6974297	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs757913	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7776627	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7783070	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792912	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7800626	0.80[EUR][1000 genomes]
rs9769724	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979863	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41011800-41042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:41034200-41037000	Enhancers	Aorta	Aorta
3	chr7:41035200-41037000	Enhancers	Fetal Muscle Leg	muscle
4	chr7:41035400-41037000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr7:41035400-41037600	Enhancers	Hela-S3	cervix
6	chr7:41035800-41037200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:41035800-41037200	Enhancers	Stomach Smooth Muscle	stomach
8	chr7:41035800-41037200	Enhancers	HSMMtube	muscle
9	chr7:41036000-41038800	Weak transcription	Fetal Brain Male	brain
10	chr7:41036400-41045000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:41036600-41037200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:41036800-41037200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:41036800-41037200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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