Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11771067	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12113729	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12701858	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12701859	0.81[EUR][1000 genomes]
rs13222733	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13239481	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13239757	0.80[EUR][1000 genomes]
rs13247967	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17622437	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1859699	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1990138	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2108183	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2190342	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35274819	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4329187	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4454200	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6974297	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs757913	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7776627	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7783070	0.86[EUR][1000 genomes]
rs7792912	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7800626	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9769724	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1990137	TMED4	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41062800-41082200	Weak transcription	Aorta	Aorta
2	chr7:41066600-41073600	Enhancers	NH-A	brain
3	chr7:41069200-41074600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:41069400-41082000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:41069800-41072800	Weak transcription	Osteobl	bone
6	chr7:41070400-41073600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:41070600-41073000	Weak transcription	NHDF-Ad	bronchial
8	chr7:41070600-41075200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:41070600-41076600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:41070800-41072400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:41070800-41073000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:41071000-41072800	Weak transcription	HMEC	breast
13	chr7:41071000-41073200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr7:41071600-41072400	Enhancers	Dnd41	blood

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